Evidence map›Paper›PMID 31009932›Full record

ArticleJournal of the neurological sciences2019

C9orf72 repeat expansions in South Africans with amyotrophic lateral sclerosis.

Melissa Nel, Gloudi M Agenbag, Franclo Henning, Helen M Cross, Alina Esterhuizen, Jeannine M Heckmann

Open access · greenAbstract read
In one paragraph

Article in Journal of the neurological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Increased frequency of repeat expansion mutations across different populations.medRxiv : the preprint server for health sciences · 2024
    Article
  4. Evidence-based consensus guidelines for ALS genetic testing and counseling.Annals of clinical and translational neurology · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Expanding Clinical Spectrum ofNeurology. Genetics · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Repeats expansions inIBRO neuroscience reports · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Melissa NelNeurology research group, Department of Medicine, University of Cape Town, Cape Town, South Africa.
Gloudi M AgenbagDivision of Human Genetics, Institute of Infectious Diseases and Molecular Medicine, Department of Pathology, University of Cape Town, Cape Town., South Africa.
Franclo HenningDivision of Neurology, Department of Medicine, University of Stellenbosch, Cape Town., South Africa.
Helen M CrossDivision of Neurology, Department of Medicine, University of Cape Town, Cape Town, South Africa.
Alina EsterhuizenDivision of Human Genetics, Institute of Infectious Diseases and Molecular Medicine, Department of Pathology, University of Cape Town, Cape Town., South Africa; National Health Laboratory Service, Groote Schuur Hospital, Cape Town, South Africa.
Jeannine M HeckmannNeurology research group, Department of Medicine, University of Cape Town, Cape Town, South Africa; Division of Neurology, Department of Medicine, University of Cape Town, Cape Town, South Africa. Electronic address: Jeanine.heckmann@uct.ac.za.
University of Cape Town · ZAGroote Schuur Hospital · ZAStellenbosch University · ZA

Funding

H3ABioNet: informatics solutions for H3AfricaU24HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2017 to 2021
$12.9M
NHGRI NIH HHS U24 HG006941
6 · The paper itself

Abstract

The hexanucleotide repeat expansion in the C9orf72 gene is the most common genetic variant found in individuals with sporadic amyotrophic lateral sclerosis (ALS), occurring at a frequency of between 7 and 11% in cohorts of European ancestry. While limited data suggest that C9-expansions (>30 repeats) are less frequent in African-Americans with ALS, there is no data on the frequency of C9-expansions among ALS subjects residing in Africa. We therefore investigated the frequency of this expansion mutation (using repeat-primed PCR) in a cohort of 143 South Africans (SA) with ALS. The cohort included different genetic ancestry subgroups who self-identified as black African (n = 24), Cape mixed-African (M/A) (n = 65), white European ancestry (n = 51), and Indian ancestry (n = 3). Three M/A individuals had a family history of ALS (2%) and all had normal C9orf72 alleles. Of the 140 individuals with sporadic ALS who were successfully genotyped, 10 (7%) carried pathogenic C9-expansions; four white and six M/A ancestry individuals, respectively. Our results highlight the importance of including Africans in genetic studies aimed at unravelling the genomic architecture in ALS and suggest pathogenetic mechanisms other than the C9orf72 expansion in black Africans with ALS.

Indexed as

AgedAmyotrophic Lateral SclerosisAsian PeopleBlack or African AmericanBlack PeopleC9orf72 ProteinCohort StudiesDNA Repeat ExpansionFemaleHumansMaleMiddle AgedSouth AfricaWhite PeopleC9orf72 ProteinC9orf72 protein, humanAfricaC9orf72GeneMotor neuron diseaseMutation

Identifiers

PMID31009932
PMCPMC6556408
OpenAlexW2939102942

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.