Evidence map›Paper›PMID 31009738›Full record

Trial reportInternational journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases2019

A pilot metabolomics study of tuberculosis immune reconstitution inflammatory syndrome.

Carlos A M Silva, Barbara Graham, Kristofor Webb, Laura Vari Ashton, Marisa Harton, Annie F Luetkemeyer, Samantha Bokatzian, Reem Almubarak, Sebabrata Mahapatra, Laura Hovind and 4 more

Open access · goldAbstract readRandomized Controlled Trial
In one paragraph

Trial report in International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Comparative Metabolomic Study ofInternational journal of molecular sciences · 2021
    Article
  10. Article
  11. Review
  12. Metabolomics as a Tool to Investigate HIV/TB Co-Infection.Frontiers in molecular biosciences · 2021
    Review
  13. Observational
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Immune Reconstitution Disorders: Spotlight on Interferons.International journal of biomedical investigation · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Carlos A M SilvaMycobacterial Research Laboratories, Fort Collins, CO, USA; Department of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, USA.
Barbara GrahamDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, USA.
Kristofor WebbMycobacterial Research Laboratories, Fort Collins, CO, USA.
Laura Vari AshtonMycobacterial Research Laboratories, Fort Collins, CO, USA.
Marisa HartonMycobacterial Research Laboratories, Fort Collins, CO, USA.
Annie F LuetkemeyerUniversity of California San Francisco, San Francisco, CA, USA.
Samantha BokatzianAgilent Technologies, Boston, MA, USA.
Reem AlmubarakNational Jewish Health, Denver, CO, USA.
Sebabrata MahapatraMycobacterial Research Laboratories, Fort Collins, CO, USA.
Laura HovindFrontier Science & Technology Research Foundation, Inc., Amherst, NY, USA.
Michelle A KendallCenter for Biostatistics in AIDS Research, Harvard T.H. Chan School of Public Health Boston, MA, USA.
Diane HavlirUniversity of California San Francisco, San Francisco, CA, USA.
John T BelisleMycobacterial Research Laboratories, Fort Collins, CO, USA.
Mary Ann De GrooteMycobacterial Research Laboratories, Fort Collins, CO, USA. Electronic address: maryann.degroote@colostate.edu.
Colorado State University · USUniversity of California, San Francisco · USAgilent Technologies (United States) · USCancer Research And Biostatistics · USFrontier Science & Technology Research Foundation · USNational Jewish Health · US

Funding

Leadership and Operations Center (LOC), AIDS Clinical Trials Group (ACTG); LOC 1/UM1AI068636 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Joseph J Eron, RAJESH T GANDHI · 2011 to 2026
$1073.1M
Statistical and Data Management Center (SDMC), AIDS Clinical Trials Group (ACTG)UM1AI068634 · NIAID · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Marlene Ann Cooper, Michael David Hughes · 2011 to 2026
$246.6M
San Francisco Vaccine and Prevention UnitUM1AI069496 · NIAID · PUBLIC HEALTH FOUNDATION ENTERPRISES · PI Susan Buchbinder, Diane V Havlir · 2012 to 2026
$30.5M
Biology and Biosignatures of Anti-Tuberculosis Treatment ResponseU01AI115619 · NIAID · COLORADO STATE UNIVERSITY · PI BELISLE, JOHN T · 2015 to 2019
$3.1M
Small molecule biomarkers for tuberculosis treatment, relapse, and cureU18FD004038 · FDA · COLORADO STATE UNIVERSITY · PI BELISLE, JOHN T · 2010 to 2011
$986k
FDA HHS U18 FD004038NIAID NIH HHS U01 AI115619NIAID NIH HHS UM1 AI068634NIAID NIH HHS UM1 AI068636NIAID NIH HHS UM1 AI069496
6 · The paper itself

Abstract

backgroundDiagnosis of paradoxical tuberculosis-associated immune reconstitution inflammatory syndrome (TB-IRIS) is challenging and new tools are needed for early diagnosis as well as to understand the biochemical events that underlie the pathology in TB-IRIS.

methodsPlasma samples were obtained from participants from a randomized HIV/TB treatment strategy study (AIDS Clinical Trials Group [ACTG] A5221) with (n = 26) and without TB-IRIS (n = 22) for an untargeted metabolomics pilot study by liquid-chromatography mass spectrometry. The metabolic profile of these participants was compared at the study entry and as close to the diagnosis of TB-IRIS as possible (TB-IRIS window). Molecular features with p < 0.05 and log

resultsAt the study entry, we showed that the arachidonic acid and glycerophospholipid metabolism were altered in the TB-IRIS group. Sphingolipid and linoleic acid metabolism were the most affected pathways during the TB-IRIS window. LASSO modeling selected a set of 8 and 7 molecular features with the potential to predict TB-IRIS at study entry and during the TB-IRIS window, respectively.

conclusionThis study suggests that the use of plasma metabolites may distinguish HIV-TB patients with and without TB-IRIS.

Indexed as

MetabolomicsAdultAnti-HIV AgentsChromatography, LiquidFemaleHIV InfectionsHumansImmune Reconstitution Inflammatory SyndromeMalePilot ProjectsTandem Mass SpectrometryTuberculosis, PulmonaryAnti-HIV AgentsAIDSBiosignature featuresIRISMetabolomicsTuberculosis

Identifiers

PMID31009738
PMCPMC6613934
OpenAlexW2939025434

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.