Evidence map›Paper›PMID 31009484›Full record

ArticlePloS one2019

Mutation of key lysine residues in the Insert B region of the yeast dynamin Vps1 disrupts lipid binding and causes defects in endocytosis.

Iwona I Smaczynska-de Rooij, Christopher J Marklew, Sarah E Palmer, Ellen G Allwood, Kathryn R Ayscough

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Iwona I Smaczynska-de RooijDepartment of Biomedical Science, University of Sheffield, Sheffield, United Kingdom.
Christopher J MarklewDepartment of Biomedical Science, University of Sheffield, Sheffield, United Kingdom.
Sarah E PalmerDepartment of Biomedical Science, University of Sheffield, Sheffield, United Kingdom.
Ellen G AllwoodDepartment of Biomedical Science, University of Sheffield, Sheffield, United Kingdom.
Kathryn R AyscoughDepartment of Biomedical Science, University of Sheffield, Sheffield, United Kingdom.ORCID 0000-0003-3716-4490
University of Sheffield · GB

Funding

Biotechnology and Biological Sciences Research Council BB/K002511/1Medical Research Council MK/K0157531/1
6 · The paper itself

Abstract

The yeast dynamin-like protein Vps1 has roles at multiple stages of membrane trafficking including Golgi to vacuole transport, endosomal recycling, endocytosis and in peroxisomal fission. While the majority of the Vps1 amino acid sequence shows a high level of identity with the classical mammalian dynamins, it does not contain a pleckstrin homology domain (PH domain). The Dyn1 PH domain has been shown to bind to lipids with a preference for PI(4,5)P2 and it is considered central to the function of Dyn1 in endocytosis. The lack of a PH domain in Vps1 has raised questions as to whether the protein can function directly in membrane fusion or fission events. Here we demonstrate that the region Insert B, located in a position equivalent to the dynamin PH domain, is able to bind directly to lipids and that mutation of three lysine residues reduces its capacity to interact with lipids, and in particular with PI(4,5)P2. The Vps1 KKK-AAA mutant shows more diffuse staining but does still show some localization to compartments adjacent to vacuoles and to endocytic sites suggesting that other factors are also involved in its recruitment. This mutant selectively blocks endocytosis, but is functional in other processes tested. While mutant Vps1 can localise to endocytic sites, the mutation results in a significant increase in the lifetime of the endocytic reporter Sla2 and a high proportion of defective scission events. Together our data indicate that the lipid binding capacity of the Insert B region of Vps1 contributes to the ability of the protein to associate with membranes and that its capacity to interact with PI(4,5)P2 is important in facilitating endocytic scission.

Indexed as

EndocytosisMutationAmino Acid SequenceEndosomesGolgi ApparatusGTP-Binding ProteinsLipidsLysineProtein TransportSaccharomyces cerevisiaeSequence HomologyVacuolesVesicular Transport ProteinsGTP-Binding ProteinsLipidsLysineVesicular Transport ProteinsVPS1 protein, S cerevisiae

Identifiers

PMID31009484
PMCPMC6476499
OpenAlexW2941916269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.