Evidence map›Paper›PMID 31007253›Full record

ArticleMedical science monitor : international medical journal of experimental and clinical research2019

Genomic Alterations of Renal Cell Carcinoma and Clinical Implications in the Chinese Population.

Shudong Zhang, Binshuai Wang, Fan Zhang, Jianfei Ye, Liyuan Ge, Lulin Ma

Open access · hybridAbstract read
In one paragraph

Article in Medical science monitor : international medical journal of experimental and clinical research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shudong ZhangDepartment of Urology, Peking University Third Hospital, Beijing, China (mainland).
Binshuai WangDepartment of Urology, Peking University Third Hospital, Beijing, China (mainland).
Fan ZhangDepartment of Urology, Peking University Third Hospital, Beijing, China (mainland).
Jianfei YeDepartment of Urology, Peking University Third Hospital, Beijing, China (mainland).
Liyuan GeDepartment of Urology, Peking University Third Hospital, Beijing, China (mainland).
Lulin MaDepartment of Urology, Peking University Third Hospital, Beijing, China (mainland).
Peking University · CNPeking University Third Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND The aim of this study was to investigate the genomic alterations of renal cell carcinoma (RCC) in Chinese patients and to evaluate the correlations between significantly mutated genes and tumor mutation burden (TMB) levels in RCC. MATERIAL AND METHODS Two batch of specimens were collected from patients with RCC. Cohort 1 enrolled 17 RCC patients. Specimens and clinicopathological data were collected and the duration of disease-free survival were evaluated with a follow-up from 2 weeks to longer than 1 year. Cohort 2 collected 70 clear cell RCC (ccRCC) tissues and blood specimens. Next-generation sequencing were used to detect the genomic variations in those specimens in both cohorts and TMB in cohort 2. Clinicopathological features of the 2 cohorts were collected and the χ² test or Fisher's exact test was used for categorical variables stratified by TMB values. RESULTS Our present study demonstrated that the top 3 most frequent aberrated genes in Chinese ccRCC patients were ABCB1, UGT1A1, and VHL, with percentages of 50.00%, 42.86%, and 34.52% respectively. And only 1 gene, which was ABCB1, showed statistically significant difference (P=0.047) stratified by TMB levels. In addition, 6 oncogenic pathways were involved in ccRCC cases in the 2 cohorts. Only 5 out of the 8 most common altered genes of RCC from COSMIC or TCGA databases were detected in our study. CONCLUSIONS The genomic alterations of Chinese RCC patients were different from that in TCGA and COSMIC. No significant genomic alterations were found correlating to TMB levels in ccRCC. Non-silent mutation of VHL may be a predictor for the outcome of ccRCC treated with axitinib.

Indexed as

AdultAgedAged, 80 and overAsian PeopleATP Binding Cassette Transporter, Subfamily BCarcinoma, Renal CellChinaCohort StudiesDisease-Free SurvivalFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGenome, HumanGenomicsGlucuronosyltransferaseHigh-Throughput Nucleotide SequencingABCB1 protein, humanATP Binding Cassette Transporter, Subfamily BGlucuronosyltransferaseUGT1A1 EnzymeVHL protein, humanVon Hippel-Lindau Tumor Suppressor Protein

Identifiers

PMID31007253
PMCPMC6489529
OpenAlexW2941718722

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.