Evidence map›Paper›PMID 31006836›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2019

Rapid detection of Salmonella contamination in seafoods using multiplex PCR.

Brundaban Sahu, Shiva D Singh, Bijay Kumar Behera, Satyen Kumar Panda, Abhishek Das, Pranaya Kumar Parida

Open access · bronzeAbstract readEvaluation Study
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  6. Review
  7. Review
  8. Toward same-day detection ofFrontiers in microbiology · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. A dual RPA-LFD assay for the simultaneous detection ofFrontiers in bioengineering and biotechnology · 2024
    Article
  13. Salmonella detection with LAMP and qPCR and identification of serovars of interest by multiplex qPCR in poultry carcasses.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Brundaban SahuCollege of Fisheries (OUAT), Rangailunda, Berhampur, Odisha, 760007, India. bsahu.fishco@gmail.com.
Shiva D SinghFormer ADG (Inland Fisheries), ICAR, New Delhi; presently at - 5/85,Biramkhand, Gomti Nagar, Lucknow, 226010, India.
Bijay Kumar BeheraICAR-CIFRI, Barrackpore, Kolkata, 700120, India.
Satyen Kumar PandaICAR-CIFT, Matsyapuri, Willingdon Island, Cochin, 682029, India.
Abhishek DasICAR-CIFRI, Barrackpore, Kolkata, 700120, India.
Pranaya Kumar ParidaICAR-CIFRI, Barrackpore, Kolkata, 700120, India.
Central Inland Fisheries Research Institute · INIndian Council of Agricultural Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Effective monitoring of Salmonella contamination in seafood processing to conform the requirements of HACCP is a great challenge today. Such challenges can be effectively addressed, if the conventional detection methods are replaced with DNA-based molecular methods. Accordingly, it was aimed to develop a robust PCR protocol for specific detection of Salmonella spp. Out of the different primers screened, one pair of primers developed in this study targeting invA gene demonstrated 100% inclusivity for a wide range of Salmonella serotypes and 100% exclusivity for wide range of non-target species. The in silico analysis of the nucleotide sequence obtained from the PCR product suggests its potential as a hybridization probe for genus specific detection of Salmonella spp. contamination. The PCR protocol was sensitive enough to detect 15 cells per reaction using crude DNA prepared within a short time directly from artificially contaminated shrimp tissue. The study demonstrated that the result of PCR reaction can come out on the same day of sample arrival. Incorporation of this pair of primers in a multiplex PCR designed for simultaneous detection of four common seafood-borne human pathogens yielded 147 bp, 302 bp, 403 bp, and 450 bp distinct DNA bands specifically targeting E. coli, toxigenic Vibrio cholerae, Salmonella spp., and V. parahaemolyticus, respectively in a single PCR tube. The PCR methods developed in this study has the potential to be used in the seafood processing plants for effective monitoring of CCPs required for implementation of HACCP-based quality assurance system.

Indexed as

AnimalsDNA PrimersFood ContaminationMultiplex Polymerase Chain ReactionPalaemonidaeSalmonellaShellfishDNA PrimersCCPHACCPinvA geneMultiplex PCRSalmonella spp.Seafood quality

Identifiers

PMID31006836
PMCPMC6863201
OpenAlexW2937217726

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.