Evidence map›Paper›PMID 31006530›Full record

ArticleCell2019

A Forward Chemical Genetic Screen Reveals Gut Microbiota Metabolites That Modulate Host Physiology.

Haiwei Chen, Phu-Khat Nwe, Yi Yang, Connor E Rosen, Agata A Bielecka, Manik Kuchroo, Gary W Cline, Andrew C Kruse, Aaron M Ring, Jason M Crawford and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 211 papers.

0numbers the graph read from it
0cells of the map it votes in
211citing papers in PubMed
15.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

211 citing papers in PubMed, 335 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Gut microbiota associate with disease severity and survival in idiopathic pulmonary fibrosis.American journal of respiratory and critical care medicine · 2026
    Article
  6. Bacterial-derived cyclic lipopeptides suppress dauer arrest inbioRxiv : the preprint server for biology · 2026
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Adhesion G protein-coupled receptors.Pharmacological reviews · 2026
    Review
  15. The GPCR Connection: Linking Alzheimer's Disease and Glioblastoma.Journal of cellular and molecular medicine · 2026
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Infection strategies ofGut microbes reports · 2026
    Review

151 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Haiwei ChenDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Phu-Khat NweChemical Biology Institute and Department of Chemistry, Yale University, West Haven and New Haven, CT, USA.
Yi YangDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Connor E RosenDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Agata A BieleckaDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Manik KuchrooYale University School of Medicine, New Haven, CT, USA.
Gary W ClineDepartment of Internal Medicine, Yale University School of Medicine, New Haven, CT, USA.
Andrew C KruseDepartment of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
Aaron M RingDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
Jason M CrawfordChemical Biology Institute and Department of Chemistry, Yale University, West Haven and New Haven, CT, USA; Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, CT, USA.
Noah W PalmDepartment of Immunobiology, Yale University School of Medicine, New Haven, CT, USA. Electronic address: noah.palm@yale.edu.
Yale University · USBoston VA Research Institute · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Cryptic gut bacterial metabolites that regulate colorectal cancer formationDP2CA186575 · NCI · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2013 to 2013
$2.5M
Uncoupling pleiotropy in the LIGHT/HVEM/LTBetaR signaling networkDP5OD023088 · OD · YALE UNIVERSITY · PI RING, AARON MICHAEL · 2016 to 2020
$2.1M
IgA-Glycosylation: Mediator of Microbial Homeostasis and Intestinal Health?R21AI137935 · NIAID · YALE UNIVERSITY · PI PALM, NOAH WOLCOTT · 2019 to 2020
$461k
Illuminating immunomodulatory gut microbes in human health and diseaseK22AI123477 · NIAID · YALE UNIVERSITY · PI PALM, NOAH WOLCOTT · 2016 to 2017
$270k
NCATS NIH HHS UL1 TR001863NCI NIH HHS DP2 CA186575NIAID NIH HHS K22 AI123477NIAID NIH HHS R21 AI137935NIH HHS DP5 OD023088
6 · The paper itself

Abstract

The intestinal microbiota produces tens of thousands of metabolites. Here, we used host sensing of small molecules by G-protein coupled receptors (GPCRs) as a lens to illuminate bioactive microbial metabolites that impact host physiology. We screened 144 human gut bacteria against the non-olfactory GPCRome and identified dozens of bacteria that activated both well-characterized and orphan GPCRs, including strains that converted dietary histidine into histamine and shaped colonic motility; a prolific producer of the essential amino acid L-Phe, which we identified as an agonist for GPR56 and GPR97; and a species that converted L-Phe into the potent psychoactive trace amine phenethylamine, which crosses the blood-brain barrier and triggers lethal phenethylamine poisoning after monoamine oxidase inhibitor administration. These studies establish an orthogonal approach for parsing the microbiota metabolome and uncover multiple biologically relevant host-microbiota metabolome interactions.

Indexed as

AnimalsBacteriaColonGastrointestinal MicrobiomeHEK293 CellsHost Microbial InteractionsHumansMiceReceptors, G-Protein-CoupledAdgrg1 protein, mouseADGRG3 protein, humanReceptors, G-Protein-Coupled

Identifiers

PMID31006530
PMCPMC6536006
OpenAlexW2939645883

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.