Evidence map›Paper›PMID 31005514›Full record

ArticleEBioMedicine2019

Chronic heavy drinking drives distinct transcriptional and epigenetic changes in splenic macrophages.

Suhas Sureshchandra, Cara Stull, Brian Jin Kee Ligh, Selene Bich Nguyen, Kathleen A Grant, Ilhem Messaoudi

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Epigenetics of alcohol-related liver diseases.JHEP reports : innovation in hepatology · 2022
    Review
  15. Review
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Suhas SureshchandraDepartment of Molecular Biology and Biochemistry, University of California-Irvine, Irvine, CA 92697, USA.
Cara StullOregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR 97006, USA.
Brian Jin Kee LighDepartment of Biomedical Engineering, University of California-Irvine, Irvine, CA 92697, USA.
Selene Bich NguyenDepartment of Molecular Biology and Biochemistry, University of California-Irvine, Irvine, CA 92697, USA.
Kathleen A GrantOregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR 97006, USA.
Ilhem MessaoudiDepartment of Molecular Biology and Biochemistry, University of California-Irvine, Irvine, CA 92697, USA; Oregon National Primate Research Center, Oregon Health and Science University, Beaverton, OR 97006, USA. Electronic address: imessaou@uci.edu.
University of California, Irvine · USOregon Health & Science University · USOregon National Primate Research Center · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Stress and Ethanol Self-Administration in MonkeysU01AA013510 · NIAAA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI KATHLEEN A GRANT · 2002 to 2026
$11.8M
Monkey Alcohol Tissue Research Resource (MATRR)R24AA019431 · NIAAA · OREGON HEALTH & SCIENCE UNIVERSITY · PI Mary Lauren Benton, Verginia Carmella Cuzon Carlson · 2010 to 2026
$10.3M
INIA: Stress, Anxiety of Alcohol AbuseU01AA013641 · NIAAA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI GRANT, KATHLEEN A · 2002 to 2015
$8.8M
Impact of chronic ethanol self administration on T cellR21AA021947 · NIAAA · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI MESSAOUDI, ILHEM · 2013 to 2014
$394k
Comprehensive Profiling of Extracellular RNA Biomarkers of Alcohol ConsumptionR21AA025839 · NIAAA · UNIVERSITY OF CALIFORNIA-IRVINE · PI MESSAOUDI, ILHEM · 2018 to 2019
$388k
NIAAA NIH HHS R21 AA021947NIAAA NIH HHS R21 AA025839NIAAA NIH HHS R24 AA019431NIAAA NIH HHS U01 AA013510NIAAA NIH HHS U01 AA013641NIH HHS P51 OD011092
6 · The paper itself

Abstract

backgroundChronic heavy alcohol drinking (CHD) leads to significant organ damage, increased susceptibility to infections, and delayed wound healing. These adverse outcomes are believed to be mediated by alterations in the function of myeloid cells; however, the mechanisms underlying these changes are poorly understood.

methodsWe determined the impact of CHD on the phenotype of splenic macrophages using flow cytometry. Changes in functional responses to LPS were measured using luminex and RNA-Seq. Finally, alterations in chromatin accessibility were uncovered using ATAC-Seq.

findingsA history of CHD led to increased frequency of splenic macrophages that exhibited a heightened activation state at resting. Additionally, splenic macrophages from CHD animals generated a larger inflammatory response to LPS, both at protein and gene expression levels. Finally, CHD resulted in increased levels of H3K4me3, a histone mark of active promoters, as well as chromatin accessibility at promoters and intergenic regions that regulate inflammatory responses.

interpretationThese findings suggest that a history of CHD alters the immune fitness of tissue-resident macrophages via epigenetic mechanisms. FUND: National Institute on Alcohol Abuse and Alcoholism (NIAAA), National Institutes of Health (NIH) - R24AA019431, U01 AA13641, U01 AA13510, R21AA021947, and R21AA025839.

Indexed as

Epigenesis, GeneticTranscription, GeneticAlcohol DrinkingAlcoholismAnimalsBiomarkersFemaleGene Expression ProfilingImmunophenotypingLipopolysaccharidesMacaca mulattaMacrophagesMaleSpleenStress, PhysiologicalTranscriptomeBiomarkersLipopolysaccharidesChromatin accessibilityChronic heavy drinkingEthanolLPSRhesus macaquesSplenic macrophages

Identifiers

PMID31005514
PMCPMC6557917
OpenAlexW2938542211

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.