Evidence map›Paper›PMID 31005274›Full record

ArticleKidney international2019

SON haploinsufficiency causes impaired pre-mRNA splicing of CAKUT genes and heterogeneous renal phenotypes.

Jung-Hyun Kim, Eun Young Park, David Chitayat, David L Stachura, Jörg Schaper, Kristin Lindstrom, Tamison Jewett, Dagmar Wieczorek, Jos M Draaisma, Margje Sinnema and 16 more

Open access · greenAbstract read
In one paragraph

Article in Kidney international, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  6. Neurology. Genetics · 2023
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  10. Distinctive Brain Malformations in Zhu-Tokita-Takenouchi-Kim Syndrome.AJNR. American journal of neuroradiology · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 15 institutions in 4 countries.

Jung-Hyun KimMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA.
Eun Young ParkMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA.
David ChitayatDivision of Clinical and Metabolic Genetics, Department of Pediatrics, The Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada; The Prenatal Diagnosis and Medical Genetics Program, Department of Obstetrics and Gynecology, Mount Sinai Hospital, University of Toronto, Toronto, Ontario, Canada; Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Ontario, Canada.
David L StachuraDepartment of Biological Sciences, California State University Chico, Chico, California, USA.
Jörg SchaperInstitute of Diagnostic and Interventional Radiology, University of Düsseldorf, Düsseldorf, Germany.
Kristin LindstromDivision of Genetics and Metabolism, Phoenix Children's Hospital, Phoenix, Arizona, USA.
Tamison JewettDepartment of Pediatrics, Section on Medical Genetics, Wake Forest University School of Medicine, Winston-Salem, North Carolina, USA.
Dagmar WieczorekInstitute of Human Genetics, University Clinic Düsseldorf, Heinrich-Heine-University, Düsseldorf, Germany; Institute of Human Genetics, University Clinic Essen, University Duisburg-Essen, Essen, Germany.
Jos M DraaismaDepartment of Pediatrics, Radboudumc Amalia Children's Hospital, Nijmegen, The Netherlands.
Margje SinnemaDepartment of Clinical Genetics and School for Oncology & Developmental Biology (GROW), Maastricht University Medical Center, Maastricht, The Netherlands.
Christianne HoeberigsDepartment of Radiology and Nuclear Medicine, Maastricht University Medical Center, Maastricht, The Netherlands.
Maja HempelInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Kristine K BachmanGeisinger Medical Center, Danville, Pennsylvania, USA.
Andrea H SeeleyGeisinger Medical Center, Danville, Pennsylvania, USA.
Joshua K StoneMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA.
Hyun Kyung KongMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA.
Lana VukadinMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA.
Alexander RichardMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA.
Deepali N ShindeAmbry Genetics, Aliso Viejo, California, USA.
Kirsty McWalterGeneDx, Inc., Gaithersburg, Maryland, USA.
Yue Cindy SiGeneDx, Inc., Gaithersburg, Maryland, USA.
Ganka DouglasGeneDx, Inc., Gaithersburg, Maryland, USA.
Ssang-Taek LimDepartment of Biochemistry and Molecular Biology, College of Medicine, University of South Alabama, Mobile, Alabama, USA.
Lisenka E L M VissersDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.
Mathieu LemaireDivision of Nephrology, Department of Pediatrics, The Hospital for Sick Children, Toronto, Ontario, Canada; Cell Biology Program, SickKids Research Institute, University of Toronto, Toronto, Ontario, Canada. Electronic address: Mathieu.lemaire@sickkids.ca.
Eun-Young Erin AhnMitchell Cancer Institute, University of South Alabama, Mobile, Alabama, USA; Department of Biochemistry and Molecular Biology, College of Medicine, University of South Alabama, Mobile, Alabama, USA. Electronic address: eahn@health.southalabama.edu.
USA Mitchell Cancer Institute · USUniversity of South Alabama · USGeisinger Medical Center · USMaastricht University · NLAmalia Kinderziekenhuis · NLAmbry Genetics (United States) · USCalifornia State University, Chico · USHeinrich Heine University Düsseldorf · DEPhoenix Children's Hospital · USRadboud University Medical Center · NLSickKids Foundation · CAUniversität Hamburg · DEUniversity of Duisburg-Essen · DEUniversity of Toronto · CAWake Forest University · US

Funding

SON-mediated gene expression and leukemiaR01CA190688 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI AHN, ERIN EUN-YOUNG · 2016 to 2021
$1.7M
NCI NIH HHS R01 CA190688
6 · The paper itself

Abstract

Although genetic testing is increasingly used in clinical nephrology, a large number of patients with congenital abnormalities of the kidney and urinary tract (CAKUT) remain undiagnosed with current gene panels. Therefore, careful curation of novel genetic findings is key to improving diagnostic yields. We recently described a novel intellectual disability syndrome caused by de novo heterozygous loss-of-function mutations in the gene encoding the splicing factor SON. Here, we show that many of these patients, including two previously unreported, exhibit a wide array of kidney abnormalities. Detailed phenotyping of 14 patients with SON haploinsufficiency identified kidney anomalies in 8 patients, including horseshoe kidney, unilateral renal hypoplasia, and renal cysts. Recurrent urinary tract infections, electrolyte disturbances, and hypertension were also observed in some patients. SON knockdown in kidney cell lines leads to abnormal pre-mRNA splicing, resulting in decreased expression of several established CAKUT genes. Furthermore, these molecular events were observed in patient-derived cells with SON haploinsufficiency. Taken together, our data suggest that the wide spectrum of phenotypes in patients with a pathogenic SON mutation is a consequence of impaired pre-mRNA splicing of several CAKUT genes. We propose that genetic testing panels designed to diagnose children with a kidney phenotype should include the SON gene.

Indexed as

HaploinsufficiencyAdolescentAdultChildChild, PreschoolDNA-Binding ProteinsFemaleGenetic TestingHEK293 CellsHumansMaleMinor Histocompatibility AntigensRNA PrecursorsRNA SplicingTRPP Cation ChannelsUrogenital AbnormalitiesDNA-Binding ProteinsMinor Histocompatibility AntigensRNA PrecursorsSON protein, humanTRPP Cation Channelsgene expressiongenetic mutationspediatric nephrologypre-mRNA splicingSON haploinsufficiency

Identifiers

PMID31005274
PMCPMC6534475
OpenAlexW2920957125

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.