Evidence map›Paper›PMID 31004454›Full record

ArticleProtein science : a publication of the Protein Society2019

Function and solution structure of the Arabidopsis thaliana RALF8 peptide.

Ronnie O Frederick, Miyoshi Haruta, Marco Tonelli, Woonghee Lee, Gabriel Cornilescu, Claudia C Cornilescu, Michael R Sussman, John L Markley

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Genome-Wide Identification of thePlants (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Phase separation: a new window in RALF signaling.Frontiers in plant science · 2024
    Article
  10. Review
  11. Genome-Wide Identification and Comparative Analysis ofInternational journal of molecular sciences · 2023
    Article
  12. RALF peptides modulate immune response in the mossFrontiers in plant science · 2023
    Article
  13. Review
  14. Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ronnie O FrederickNational Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
Miyoshi HarutaBiotechnology Center, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
Marco TonelliNational Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
Woonghee LeeNational Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
Gabriel CornilescuNational Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
Claudia C CornilescuNational Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
Michael R SussmanBiotechnology Center, University of Wisconsin-Madison, Madison, Wisconsin, 53706.
John L MarkleyNational Magnetic Resonance Facility at Madison, University of Wisconsin-Madison, Madison, Wisconsin, 53706.ORCID 0000-0003-1799-6134

Funding

TR&D 3: TECHNOLOGY DEVELOPMENT FOR NMR STUDIES OF SMALL MOLECULES (METABOLOMICS, NATURAL PRODUCTS, METABOLITE-PROTEIN INTERACTIONS) pp.537-585 P41GM103399 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BUTCHER, SAMUEL E · 2012 to 2019
$9.4M
RIBONUCLEASES IN CANCER THERAPYR01CA073808 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI RAINES, RONALD T · 1997 to 2024
$7.3M
WIDE-BORE 9.4 TESLA NMR SPECTROMETER FOR UW-MADISONS10RR002781 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI MARKLEY, JOHN L · 1986 to 1986
–
CONSOLE UPGRADES FOR NMR FACILITYS10RR008438 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI MARKLEY, JOHN L · 1993 to 1993
–
NCI NIH HHS R01 CA073808NCRR NIH HHS RR02781NCRR NIH HHS RR08438NCRR NIH HHS S10 RR002781NCRR NIH HHS S10 RR008438NIGMS NIH HHS P41 GM103399
6 · The paper itself

Abstract

We report the recombinant preparation from Escherichia coli cells of samples of two closely related, small, secreted cysteine-rich plant peptides: rapid alkalinization factor 1 (RALF1) and rapid alkalinization factor 8 (RALF8). Purified samples of the native sequence of RALF8 exhibited well-resolved nuclear magnetic resonance (NMR) spectra and also biological activity through interaction with a plant receptor kinase, cytoplasmic calcium mobilization, and in vivo root growth suppression. By contrast, RALF1 could only be isolated from inclusion bodies as a construct containing an N-terminal His-tag; its poorly resolved NMR spectrum was indicative of aggregation. We prepared samples of the RALF8 peptide labeled with

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsNuclear Magnetic Resonance, BiomolecularProtein ConformationSequence AlignmentSolutionsArabidopsis ProteinsRAPID ALKALINIZATION FACTOR-LIKE8 protein, ArabidopsisSolutionscytoplasmic calcium activation assaydisulfide pairingNMR solution structurepeptide dynamicspeptide productionpeptide structurerapid alkanization factor (RALF)root growth assaystable isotope labeling

Identifiers

PMID31004454
PMCPMC6511734

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.