Evidence map›Paper›PMID 31004035›Full record

ArticleThe Journal of biological chemistry2019

Heterogeneous translational landscape of the endoplasmic reticulum revealed by ribosome proximity labeling and transcriptome analysis.

Alyson M Hoffman, Qiang Chen, Tianli Zheng, Christopher V Nicchitta

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. SF-1 Induces Nuclear PIP2.Biomolecules · 2023
    Article
  9. Review
  10. Article
  11. Article
  12. Regulation and outcomes of localized RNA translation.Wiley interdisciplinary reviews. RNA · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Alyson M HoffmanFrom the Departments of Biochemistry and.
Qiang ChenCell Biology, Duke University School of Medicine, Durham, North Carolina 27710.
Tianli ZhengCell Biology, Duke University School of Medicine, Durham, North Carolina 27710.
Christopher V NicchittaFrom the Departments of Biochemistry and christopher.nicchitta@duke.edu.ORCID 0000-0001-7889-1155
Duke University · USNorth Carolina School of Science and Mathematics · US

Funding

mRNA Localization in Organelle BiogenesisR01GM101533 · NIGMS · DUKE UNIVERSITY · PI NICCHITTA, CHRISTOPHER V. · 2012 to 2020
$2.4M
Mechanisms of Translational Compartmentalization in Eukaryotic CellsR01GM118630 · NIGMS · DUKE UNIVERSITY · PI NICCHITTA, CHRISTOPHER V. · 2017 to 2020
$1.5M
Instrumentation for Quantitative Phosphoproteomics and AcetylomicsS10OD012266 · OD · DUKE UNIVERSITY · PI MOSELEY, MARTIN ARTHUR · 2014 to 2014
$320k
NIGMS NIH HHS R01 GM101533NIGMS NIH HHS R01 GM118630NIH HHS S10 OD012266
6 · The paper itself

Abstract

The endoplasmic reticulum (ER) is a nexus for mRNA localization and translation, and recent studies have demonstrated that ER-bound ribosomes also play a transcriptome-wide role in regulating proteome composition. The Sec61 translocon (SEC61) serves as the receptor for ribosomes that translate secretory/integral membrane protein-encoding mRNAs, but whether SEC61 also serves as a translation site for cytosolic protein-encoding mRNAs remains unknown. Here, using a BioID proximity-labeling approach in HEK293T Flp-In cell lines, we examined interactions between ER-resident proteins and ribosomes

Indexed as

BiotinCytosolEndoplasmic ReticulumGene Expression ProfilingGenes, ReporterHarringtoninesHEK293 CellsHumansMembrane ProteinsPolyribosomesProtein BiosynthesisProtein SubunitsRibosomesRNA, MessengerSEC Translocation ChannelsBiotinharringtoninHarringtoninesLRRC59 protein, humanMembrane ProteinsProtein SubunitsribophorinRNA, MessengerSEC Translocation ChannelsBioID proximity labelingendoplasmic reticulum (ER)membrane structuremRNAproteomicsribosomeribosome receptorRNA-binding proteinSec translocon

Identifiers

PMID31004035
PMCPMC6552412
OpenAlexW2939049671

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.