Evidence map›Paper›PMID 31003979›Full record

ArticleGut2020

Fungi participate in the dysbiosis of gut microbiota in patients with primary sclerosing cholangitis.

Sara Lemoinne, Astrid Kemgang, Karima Ben Belkacem, Marjolène Straube, Sarah Jegou, Christophe Corpechot, Saint-Antoine IBD Network, Olivier Chazouillères, Chantal Housset, Harry Sokol

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Gut, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed, 2 pooled it
15.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 2 syntheses or guidelines pooled it, 214 citations in OpenAlex.

  1. Pooled it
  2. [Guidelines on the diagnosis and management of primary sclerosing cholangitis (2021)].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2022
    Guideline
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Occurrence and Co-Occurrence of Regulated and Emerging Mycotoxins in Foods Marketed to U.S. Toddlers.International journal of environmental research and public health · 2026
    Article
  8. Observational
  9. Review
  10. Article
  11. Review
  12. [Exploring the research on the molecular mechanisms of autoimmune liver diseases].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2026
    Review
  13. Review
  14. Article
  15. Review
  16. Article
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  18. Article
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71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Sara LemoinneCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Astrid KemgangCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Karima Ben BelkacemCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Marjolène StraubeCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Sarah JegouCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Christophe CorpechotCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Saint-Antoine IBD Network
Olivier ChazouillèresCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.
Chantal HoussetCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.ORCID 0000-0001-6469-0651
Harry SokolCentre de Recherche Saint-Antoine (CRSA), Sorbonne Université, INSERM, Paris, France.ORCID 0000-0002-2914-1822
Inserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivePatients with primary sclerosing cholangitis (PSC) were previously shown to display a bacterial gut dysbiosis but fungal microbiota has never been examined in these patients. The aim of this study was to assess the fungal gut microbiota in patients with PSC.

designWe analysed the faecal microbiota of patients with PSC and concomitant IBD (n=27), patients with PSC and no IBD (n=22), patients with IBD and no PSC (n=33) and healthy subjects (n=30). Bacterial and fungal composition of the faecal microbiota was determined using 16S and ITS2 sequencing, respectively.

resultsWe found that patients with PSC harboured bacterial dysbiosis characterised by a decreased biodiversity, an altered composition and a decreased correlation network density. These alterations of the microbiota were associated with PSC, independently of IBD status. For the first time, we showed that patients with PSC displayed a fungal gut dysbiosis, characterised by a relative increase in biodiversity and an altered composition. Notably, we observed an increased proportion of

conclusionThis study demonstrates that bacteria and fungi contribute to gut dysbiosis in PSC.

Indexed as

Gastrointestinal MicrobiomeAdultAgedBacteriaBacterial Typing TechniquesBiodiversityCholangitis, SclerosingDysbiosisFemaleFungiHumansInflammatory Bowel DiseasesMaleMiddle AgedMycological Typing TechniquesYoung Adultfungigut microbiotainflammatory bowel diseaseprimary sclerosing cholangitis

Identifiers

PMID31003979
OpenAlexW2937834684

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.