ArticleBMC plant biology2019
Genome-wide association studies of seven agronomic traits under two sowing conditions in bread wheat.
Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
- Genetic dissection of cold stress tolerance and yield potential under cold stress in nested synthetic wheat (Triticum aestivum L.) introgression libraries using multi-locus genome-wide association and haplotype analysis.Functional & integrative genomics · 2026Article
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- Genome-wide association study for agronomic and yield-related traits in spring wheat (Triticum aestivum L.) germplasm.BMC plant biology · 2025Article
- Unraveling the genetic basis of heat tolerance and yield in bread wheat: QTN discovery and Its KASP-assisted validation.BMC plant biology · 2025Article
- The Genetics and Breeding of Heat Stress Tolerance in Wheat: Advances and Prospects.Plants (Basel, Switzerland) · 2025Review
- Deciphering the genetic basis of novel traits that discriminate useful and non-useful biomass to enhance harvest index in wheat.The plant genome · 2024Article
- Genome-wide association study for seedling heat tolerance under two temperature conditions in bread wheat (Triticum aestivum L.).BMC plant biology · 2024Article
- Genetic dissection of value-added quality traits and agronomic parameters through genome-wide association mapping in bread wheat (Frontiers in plant science · 2024Article
- Comparing performances of different statistical models and multiple threshold methods in a nested association mapping population of wheat.Frontiers in plant science · 2024Article
- Deciphering genetic basis of developmental and agronomic traits by integrating high-throughput optical phenotyping and genome-wide association studies in wheat.Plant biotechnology journal · 2023Article
- Article
- Grain yield and adaptation of spring wheat to Norwegian growing conditions is driven by allele frequency changes at key adaptive loci discovered by genome-wide association mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Identification of novel putative alleles related to important agronomic traits of wheat using robust strategies in GWAS.Scientific reports · 2023Article
- Genome-wide association study of maize resistance toFrontiers in plant science · 2023Article
- A Haplotype-Based GWAS Identified Trait-Improving QTL Alleles Controlling Agronomic Traits under Contrasting Nitrogen Fertilization Treatments in the MAGIC Wheat Population WM-800.Plants (Basel, Switzerland) · 2022Article
- Genome-Wide Association Analysis for Hybrid Breeding in Wheat.International journal of molecular sciences · 2022Article
- Genome-Wide Association Study in Bread Wheat Identifies Genomic Regions Associated with Grain Yield and Quality under Contrasting Water Availability.International journal of molecular sciences · 2022Article
- Omics: a tool for resilient rice genetic improvement strategies.Molecular biology reports · 2022Review
- GWAS for main effects and epistatic interactions for grain morphology traits in wheat.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Physiological and molecular insights on wheat responses to heat stress.Plant cell reports · 2022Review
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundWheat is a cool seasoned crop requiring low temperature during grain filling duration and therefore increased temperature causes significant yield reduction. A set of 125 spring wheat genotypes from International Maize and Wheat Improvement Centre (CIMMYT-Mexico) was evaluated for phenological and yield related traits at three locations in Pakistan under normal sowing time and late sowing time for expose to prolonged high temperature. With the help of genome-wide association study using genotyping-by-sequencing, marker trait associations (MTAs) were observed separately for the traits under normal and late sown conditions.
resultsSignificant reduction ranging from 9 to 74% was observed in all traits under high temperature. Especially 30, 25, 41 and 66% reduction was observed for days to heading (DH), plant height (PH), spikes per plant (SPP) and yield respectively. We identified 55,954 single nucleotide polymorphisms (SNPs) using genotyping by sequencing of these 125 hexaploid spring wheat genotypes and conducted genome-wide association studies (GWAS) for days to heading (DH), grain filled duration (GFD), plant height (PH), spikes per plant (SPP), grain number per spike (GNS), thousand kernel weight (TKW) and grain yield per plot (GY). Genomic regions identified through GWAS explained up to 13% of the phenotypic variance, on average. A total of 139 marker-trait associations (MTAs) across three wheat genomes (56 on genome A, 55 on B and 28 on D) were identified for all the seven traits studied. For days to heading, 20; grain filled duration, 21; plant height, 23; spikes per plant, 13; grain numbers per spike, 8; thousand kernel weight, 21 and for grain yield, 33 MTAs were detected under normal and late sown conditions.
conclusionsThis study identifies the essential resource of genetics research and underpins the chromosomal regions of seven agronomic traits under normal and high temperature. Significant relationship was observed between the number of favored alleles and trait observations. Fourteen protein coding genes with their respective annotations have been searched with the sequence of seven MTAs which were identified in this study. These findings will be helpful in the development of a breeder friendly platform for the selection of high yielding wheat lines at high temperature areas.
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