Evidence map›Paper›PMID 31003511›Full record

ArticleViruses2019

Distribution and Phylogeny of Erythrocytic Necrosis Virus (ENV) in Salmon Suggests Marine Origin.

Veronica A Pagowski, Gideon J Mordecai, Kristina M Miller, Angela D Schulze, Karia H Kaukinen, Tobi J Ming, Shaorong Li, Amy K Teffer, Amy Tabata, Curtis A Suttle

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Veronica A PagowskiDepartment of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2207 Main Mall, Vancouver, BC V6T 1Z4, Canada. v.pagowski@alumni.ubc.ca.ORCID 0000-0003-4796-2277
Gideon J MordecaiDepartment of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2207 Main Mall, Vancouver, BC V6T 1Z4, Canada. gmordecai@eoas.ubc.ca.ORCID 0000-0001-8397-9194
Kristina M MillerPacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada. Kristi.Saunders@dfo-mpo.gc.ca.
Angela D SchulzePacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada. Angela.Schulze@dfo-mpo.gc.ca.
Karia H KaukinenPacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada. Karia.Kaukinen@dfo-mpo.gc.ca.
Tobi J MingPacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada. Tobi.Ming@dfo-mpo.gc.ca.
Shaorong LiPacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada. Shaorong.Li@dfo-mpo.gc.ca.
Amy K TefferBiology Department, University of Victoria, 3800 Finnerty Rd, Victoria, BC V8P 5C2, Canada. akteffer@gmail.com.ORCID 0000-0001-5322-2617
Amy TabataPacific Biological Station, Fisheries and Oceans Canada, 3190 Hammond Bay Rd, Nanaimo, BC V9T 6N7, Canada. Amy.Tabata@dfo-mpo.gc.ca.
Curtis A SuttleDepartment of Earth, Ocean and Atmospheric Sciences, University of British Columbia, 2207 Main Mall, Vancouver, BC V6T 1Z4, Canada. suttle@science.ubc.ca.ORCID 0000-0002-0372-0033
Fisheries and Oceans Canada · CAUniversity of British Columbia · CAUniversity of Victoria · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral erythrocytic necrosis (VEN) affects over 20 species of marine and anadromous fishes in the North Atlantic and North Pacific Oceans. However, the distribution and strain variation of its viral causative agent, erythrocytic necrosis virus (ENV), has not been well characterized within Pacific salmon. Here, metatranscriptomic sequencing of Chinook salmon revealed that ENV infecting salmon was closely related to ENV from Pacific herring, with inferred amino-acid sequences from Chinook salmon being 99% identical to those reported for herring. Sequence analysis also revealed 89 protein-encoding sequences attributed to ENV, greatly expanding the amount of genetic information available for this virus. High-throughput PCR of over 19,000 fish showed that ENV is widely distributed in the NE Pacific Ocean and was detected in 12 of 16 tested species, including in 27% of herring, 38% of anchovy, 17% of pollock, and 13% of sand lance. Despite frequent detection in marine fish, ENV prevalence was significantly lower in fish from freshwater (0.03%), as assessed with a generalized linear mixed effects model (

Indexed as

AnimalsBritish ColumbiaDNA Virus InfectionsFish DiseasesFishesIridoviridaeNucleic Acid HybridizationPacific OceanPhylogenySalmonSeasonsSeawaterSequence Analysis, RNAViral LoadViral ProteinsViral ProteinsBritish Columbiaerythrocytic necrosis virus (ENV)Pacific herringPacific salmonviral erythrocytic necrosis (VEN)

Identifiers

PMID31003511
PMCPMC6520742
OpenAlexW2939452509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.