Evidence map›Paper›PMID 31003199›Full record

ReviewCurrent opinion in virology2019

Slow and steady wins the race: physical limits on the rate of viral DNA packaging.

Paul J Jardine

Open access · greenAbstract readReview
In one paragraph

Review in Current opinion in virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Paul J JardineDepartment of Diagnostic and Biological Sciences, University of Minnesota, 18-242 Moos Tower, 515 Delaware St SE, Minneapolis, MN 55455, United States. Electronic address: jardine@umn.edu.
University of Minnesota · US

Funding

RNA IN VIRAL DNA PACKAGINGR01GM059604 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI JARDINE, PAUL JAMES · 1999 to 2017
$5.1M
Mechanisms of Viral DNA PackagingR01GM071552 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 2004 to 2015
$4.7M
The DNA Packaging Motor of Bacteriophage phi29R01GM122979 · NIGMS · UNIVERSITY OF MINNESOTA · PI JARDINE, PAUL JAMES, MORAIS, MARC · 2017 to 2024
$4.1M
Mechanisms of Viral DNA PackagingR56AI127809 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUSTAMANTE, CARLOS JOSE · 2018 to 2018
$579k
NIAID NIH HHS R56 AI127809NIGMS NIH HHS R01 GM059604NIGMS NIH HHS R01 GM071552NIGMS NIH HHS R01 GM122979
6 · The paper itself

Abstract

During the assembly of dsDNA viruses such as the tailed bacteriophages and herpesviruses, the viral chromosome is compacted to near crystalline density inside a preformed head shell. DNA translocation is driven by powerful ring ATPase motors that couple ATP binding, hydrolysis, and release to force generation and movement. Studies of the motor of the bacteriophage phi29 have revealed a complex mechanochemistry behind this process that slows as the head fills. Recent studies of the physical behavior of packaging DNA suggest that surprisingly long-time scales of relaxation of DNA inside the head and jamming phenomena during packaging create the physical need for regulation of the rate of packaging. Studies of DNA packaging in viral systems have, therefore, revealed fundamental insight into the complex behavior of DNA and the need for biological systems to accommodate these physical constraints.

Indexed as

DNA PackagingAdenosine TriphosphateBacteriophagesDNA, ViralModels, MolecularTranslocation, GeneticViral ProteinsVirus AssemblyVirusesAdenosine TriphosphateDNA, ViralViral Proteins

Identifiers

PMID31003199
PMCPMC6626563
OpenAlexW2940041448

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.