Evidence map›Paper›PMID 31000750›Full record

ArticleScientific reports2019

Life-stage specific transcriptomes of a migratory endoparasitic plant nematode, Radopholus similis elucidate a different parasitic and life strategy of plant parasitic nematodes.

Xin Huang, Chun-Ling Xu, Si-Hua Yang, Jun-Yi Li, Hong-Le Wang, Zi-Xu Zhang, Chun Chen, Hui Xie

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Advances in Migratory Plant Endoparasitic Nematode Effectors.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Transcriptome Analysis ofPlants (Basel, Switzerland) · 2024
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. A draft transcriptome of a parasiteJournal of nematology · 2021
    Article
  15. Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Xin HuangLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Chun-Ling XuLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Si-Hua YangLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Jun-Yi LiLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Hong-Le WangLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Zi-Xu ZhangLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Chun ChenLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China.
Hui XieLaboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology Pathology/Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Integrative Microbiology Research Centre, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China. xiehui@scau.edu.cn.
South China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Radopholus similis is an important migratory endoparasitic nematode, severely harms banana, citrus and many other commercial crops. Little is known about the molecular mechanism of infection and pathogenesis of R. similis. In this study, 64761 unigenes were generated from eggs, juveniles, females and males of R. similis. 11443 unigenes showed significant expression difference among these four life stages. Genes involved in host parasitism, anti-host defense and other biological processes were predicted. There were 86 and 102 putative genes coding for cell wall degrading enzymes and antioxidase respectively. The amount and type of putative parasitic-related genes reported in sedentary endoparasitic plant nematodes are variable from those of migratory parasitic nematodes on plant aerial portion. There were no sequences annotated to effectors in R. similis, involved in feeding site formation of sedentary endoparasites nematodes. This transcriptome data provides a new insight into the parasitic and pathogenic molecular mechanisms of the migratory endoparasitic nematodes. It also provides a broad idea for further research on R. similis.

Indexed as

AnimalsGene Expression RegulationHelminth ProteinsPhylogenyPlant DiseasesPlantsTranscriptomeTylenchoideaHelminth Proteins

Identifiers

PMID31000750
PMCPMC6472380
OpenAlexW2938628868

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.