Evidence map›Paper›PMID 31000719›Full record

ArticleNature communications2019

L amino acid transporter structure and molecular bases for the asymmetry of substrate interaction.

Ekaitz Errasti-Murugarren, Joana Fort, Paola Bartoccioni, Lucía Díaz, Els Pardon, Xavier Carpena, Meritxell Espino-Guarch, Antonio Zorzano, Christine Ziegler, Jan Steyaert and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Over-Production of the Human SLC7A10 inInternational journal of molecular sciences · 2023
    Article
  14. Article
  15. Review
  16. Cyclic di-AMP traps proton-coupled KNature communications · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 4 countries.

Ekaitz Errasti-MurugarrenInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, 08028, Barcelona, Spain.ORCID http://orcid.org/0000-0002-6054-7900
Joana FortInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, 08028, Barcelona, Spain.ORCID http://orcid.org/0000-0003-0399-2116
Paola BartoccioniInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, 08028, Barcelona, Spain.
Lucía DíazBarcelona Supercomputing Center (BSC), Joint BSC-CRG-IRB Research Program in Computational Biology, Life Sciences Department, 08034, Barcelona, Spain.
Els PardonVIB-VUB Center for Structural Biology, Pleinlaan 2, 1050, Brussels, Belgium.
Xavier CarpenaCELLS-ALBA Synchrotron Light Source, 08290, Barcelona, Spain.
Meritxell Espino-GuarchTranslational Medicine, Sidra Medicine, 26999, Doha, Qatar.ORCID http://orcid.org/0000-0002-7211-3229
Antonio ZorzanoInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, 08028, Barcelona, Spain.ORCID http://orcid.org/0000-0002-1638-0306
Christine ZieglerInstitute of Biophysics and Biophysical Chemistry, Universität Regensburg, 95053, Regensburg, Germany.
Jan SteyaertVIB-VUB Center for Structural Biology, Pleinlaan 2, 1050, Brussels, Belgium.ORCID http://orcid.org/0000-0002-3825-874X
Juan Fernández-RecioBarcelona Supercomputing Center (BSC), Joint BSC-CRG-IRB Research Program in Computational Biology, Life Sciences Department, 08034, Barcelona, Spain.
Ignacio FitaBarcelona Molecular Biology Institut (IBMB-CSIC) and Unit of Excellence María de Maeztu, 08028, Barcelona, Spain. ifrcri@ibmb.csic.es.
Manuel PalacínInstitute for Research in Biomedicine (IRB Barcelona), Barcelona Institute of Science and Technology, 08028, Barcelona, Spain. manuel.palacin@irbbarcelona.org.
Barcelona Supercomputing Center · ESCentre for Biomedical Network Research on Rare Diseases · ESVrije Universiteit Brussel · BEALBA Synchrotron (Spain) · ESCentro de Investigación Biomédica en Red · ESCentro de Investigación Biomédica en Red Diabetes y Enfermedades Metabólicas Asociadas · ESInstitut de Biologia Molecular de Barcelona · ESInstitute for Research in Biomedicine · ESQatar Airways (Qatar) · QAUniversity of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

L-amino acid transporters (LATs) play key roles in human physiology and are implicated in several human pathologies. LATs are asymmetric amino acid exchangers where the low apparent affinity cytoplasmic side controls the exchange of substrates with high apparent affinity on the extracellular side. Here, we report the crystal structures of an LAT, the bacterial alanine-serine-cysteine exchanger (BasC), in a non-occluded inward-facing conformation in both apo and substrate-bound states. We crystallized BasC in complex with a nanobody, which blocks the transporter from the intracellular side, thus unveiling the sidedness of the substrate interaction of BasC. Two conserved residues in human LATs, Tyr 236 and Lys 154, are located in equivalent positions to the Na1 and Na2 sites of sodium-dependent APC superfamily transporters. Functional studies and molecular dynamics (MD) calculations reveal that these residues are key for the asymmetric substrate interaction of BasC and in the homologous human transporter Asc-1.

Indexed as

Amino Acid Transport System y+Aminoisobutyric AcidsAnimalsBacterial ProteinsBinding SitesCamelids, New WorldCrystallography, X-RayHeLa CellsHumansMolecular Dynamics SimulationMutagenesis, Site-DirectedProtein BindingSingle-Chain AntibodiesSubstrate Specificity2-aminoisobutyric acidAmino Acid Transport System y+Aminoisobutyric AcidsBacterial ProteinsSingle-Chain AntibodiesSLC7A10 protein, human

Identifiers

PMID31000719
PMCPMC6472337
OpenAlexW2940303196

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.