ArticleGenome biology2019
Whole genomes and transcriptomes reveal adaptation and domestication of pistachio.
Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.
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Who cites it
53 citing papers in PubMed, 133 citations in OpenAlex.
- Comparison of Heterozygosity and Genetic Diversity Between Wild and Domesticated Macadamia.Biology · 2026Article
- Functional Roles of Arbuscular Mycorrhizal Fungi and Plant Growth-Promoting Rhizobacteria in Pistachio: Implications for Stress Tolerance, Nutrient Acquisition and Disease Suppression.Plants (Basel, Switzerland) · 2026Review
- The Rhus chinensis Genome Provides Insights Into Tannin, Flavonoid Biosynthesis, and Glandular Trichome Development.Plant biotechnology journal · 2026Article
- Investigation of the effects of salt stress on morphological, physiological, biochemical, antioxidant characteristics, and gene expression responses in pistachio(Pistacia vera L.).BMC plant biology · 2026Article
- First Insights into Ploidy and Genome Size Estimation inPlants (Basel, Switzerland) · 2025Article
- In a nutshell: pistachio genome and kernel development.The New phytologist · 2025Article
- Analysis of gene expansion and defense-related genes in Anacardiaceae family from an evolutionary aspect.Frontiers in plant science · 2025Article
- The male and female genomes of golden pompano (Trachinotus ovatus) provide insights into the sex chromosome evolution and rapid growth.Journal of advanced research · 2024Article
- Next-generation data filtering in the genomics era.Nature reviews. Genetics · 2024Review
- Genome-wide identification of SHMT family genes in alfalfa (Medicago sativa) and its functional analyses under various abiotic stresses.BMC genomics · 2024Article
- Catechin promotes the germination of Pistacia chinensis seeds via GA biosynthesis.Annals of botany · 2024Article
- Divergent Retention of Sucrose Metabolism Genes after Whole Genome Triplication in the Tomato (Plants (Basel, Switzerland) · 2023Article
- Genome sequence and salinity adaptation of the desert shrub Nitraria sibirica (Nitrariaceae, Sapindales).DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution.Plant communications · 2023Article
- Population genomic analysis provides evidence of the past success and future potential of South China tiger captive conservation.BMC biology · 2023Article
- From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes.Scientific reports · 2023Article
- Genome assembly and association tests identify interacting loci associated with vigor, precocity, and sex in interspecific pistachio rootstocks.G3 (Bethesda, Md.) · 2023Article
- History, Phylogeny, Biodiversity, and New Computer-Based Tools for Efficient Micropropagation and Conservation of Pistachio (Plants (Basel, Switzerland) · 2023Review
- Temporal transcriptome and metabolite analyses provide insights into the biochemical and physiological processes underlying endodormancy release in pistachio (Frontiers in plant science · 2023Article
- Combined genomic and transcriptomic analysis reveals the contribution of tandem duplication genes to low-temperature adaptation in perennial ryegrass.Frontiers in plant science · 2023Article
Corrections and comments
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Authors and funding
17 authors at 7 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPistachio (Pistacia vera), one of the most important commercial nut crops worldwide, is highly adaptable to abiotic stresses and is tolerant to drought and salt stresses.
resultsHere, we provide a draft de novo genome of pistachio as well as large-scale genome resequencing. Comparative genomic analyses reveal stress adaptation of pistachio is likely attributable to the expanded cytochrome P450 and chitinase gene families. Particularly, a comparative transcriptomic analysis shows that the jasmonic acid (JA) biosynthetic pathway plays an important role in salt tolerance in pistachio. Moreover, we resequence 93 cultivars and 14 wild P. vera genomes and 35 closely related wild Pistacia genomes, to provide insights into population structure, genetic diversity, and domestication. We find that frequent genetic admixture occurred among the different wild Pistacia species. Comparative population genomic analyses reveal that pistachio was domesticated about 8000 years ago and suggest that key genes for domestication related to tree and seed size experienced artificial selection.
conclusionsOur study provides insight into genetic underpinning of local adaptation and domestication of pistachio. The Pistacia genome sequences should facilitate future studies to understand the genetic basis of agronomically and environmentally related traits of desert crops.
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