Evidence map›Paper›PMID 30998839›Full record

ArticleChembiochem : a European journal of chemical biology2019

Probing the Substrate Promiscuity of Isopentenyl Phosphate Kinase as a Platform for Hemiterpene Analogue Production.

Sean Lund, Taylor Courtney, Gavin J Williams

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. International journal of systematic and evolutionary microbiology · 2024
    Article
  8. Article
  9. Article
  10. ACS chemical biology · 2022
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sean LundDepartment of Chemistry, NC State University, 2620 Yarbrough Drive, Raleigh, NC, 27695, USA.
Taylor CourtneyDepartment of Chemistry, NC State University, 2620 Yarbrough Drive, Raleigh, NC, 27695, USA.
Gavin J WilliamsDepartment of Chemistry, NC State University, 2620 Yarbrough Drive, Raleigh, NC, 27695, USA.ORCID 0000-0003-2172-9063
North Carolina State University · US

Funding

Synthetic Biology Approach to Regioselectively Modified PolyketidesR01GM104258 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI WILLIAMS, GAVIN J · 2013 to 2017
$1.4M
NIGMS NIH HHS R01 GM104258
6 · The paper itself

Abstract

Isoprenoids are a large class of natural products with wide-ranging applications. Synthetic biology approaches to the manufacture of isoprenoids and their new-to-nature derivatives are limited due to the provision in nature of just two hemiterpene building blocks for isoprenoid biosynthesis. To address this limitation, artificial chemo-enzymatic pathways such as the alcohol-dependent hemiterpene (ADH) pathway serve to leverage consecutive kinases to convert exogenous alcohols into pyrophosphates that could be coupled to downstream isoprenoid biosynthesis. To be successful, each kinase in this pathway should be permissive of a broad range of substrates. For the first time, we have probed the promiscuity of the second enzyme in the ADH pathway-isopentenyl phosphate kinase from Thermoplasma acidophilum-towards a broad range of acceptor monophosphates. Subsequently, we evaluate the suitability of this enzyme to provide unnatural pyrophosphates and provide a critical first step in characterizing the rate-limiting steps in the artificial ADH pathway.

Indexed as

Substrate SpecificityAlcoholsDiphosphatesHemiterpenesPhosphatesProtein KinasesSynthetic BiologyTerpenesThermoplasmaAlcoholsDiphosphatesHemiterpenesisopentenyl monophosphate kinasePhosphatesProtein KinasesTerpeneshemiterpeneskinasesphosphorylationsynthetic biologyterpenoids

Identifiers

PMID30998839
PMCPMC6818514
OpenAlexW2938963576

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.