Evidence map›Paper›PMID 30998736›Full record

ArticlePloS one2019

Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting.

Natalia Maria Silva, Aline Márcia Silva Araújo de Oliveira, Stefania Pegorin, Camila Escandura Giusti, Vitor Batista Ferrari, Deibs Barbosa, Layla Farage Martins, Carlos Morais, João Carlos Setubal, Suzan Pantaroto Vasconcellos and 4 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Natalia Maria SilvaDepartamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Aline Márcia Silva Araújo de OliveiraDepartamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Stefania PegorinDepartamento de Ciências Biológicas, Universidade Federal de São Paulo, Diadema, Brazil.
Camila Escandura GiustiDepartamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal de São Paulo, São Paulo, Brazil.
Vitor Batista FerrariDepartamento de Ciências Farmacêuticas da Universidade Federal de São Paulo, Diadema, Brazil.
Deibs BarbosaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Layla Farage MartinsDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Carlos MoraisDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
João Carlos SetubalDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.ORCID 0000-0001-9174-2816
Suzan Pantaroto VasconcellosDepartamento de Ciências Farmacêuticas da Universidade Federal de São Paulo, Diadema, Brazil.
Aline Maria da SilvaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Julio Cezar Franco de OliveiraDepartamento de Ciências Biológicas, Universidade Federal de São Paulo, Diadema, Brazil.
Renata Castiglioni PasconDepartamento de Ciências Biológicas, Universidade Federal de São Paulo, Diadema, Brazil.
Cristina Viana-NieroDepartamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal de São Paulo, São Paulo, Brazil.ORCID 0000-0002-1068-7884
Universidade Federal de São Paulo · BRUniversidade de São Paulo · BRInstituto de Ciências Farmacêuticas · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hydrocarbons are important environmental pollutants, and the isolation and characterization of new microorganisms with the ability to degrade these compounds are important for effective biodegradation. In this work we isolated and characterized several bacterial isolates from compost, a substrate rich in microbial diversity. The isolates were obtained from selective culture medium containing n-hexadecane, aiming to recover alkane-degraders. Six isolates identified as Gordonia by MALDI-TOF and 16S rRNA sequencing had the ability to degrade n-hexadecane in three days. Two isolates were selected for genomic and functional characterization, Gordonia paraffinivorans (MTZ052) and Gordonia sihwensis (MTZ096). The CG-MS results showed distinct n-hexadecane degradation rates for MTZ052 and MTZ096 (86% and 100% respectively). The genome sequence showed that MTZ052 encodes only one alkane degrading gene cluster, the CYP153 system, while MTZ096 harbors both the Alkane Hydroxylase (AH) and the CYP153 systems. qPCR showed that both gene clusters are induced by the presence of n-hexadecane in the growth medium, suggesting that G. paraffinivorans and G. sihwensis use these systems for degradation. Altogether, our results indicate that these Gordonia isolates have a good potential for biotransformation of hydrocarbons.

Indexed as

ActinobacteriaCompostingSoil MicrobiologyAlkanesBacterial ProteinsCytochrome P-450 Enzyme SystemGenome, BacterialAlkanesBacterial Proteinscytochrome P-450 CYP153 (Acinetobacter)Cytochrome P-450 Enzyme Systemn-hexadecane

Identifiers

PMID30998736
PMCPMC6472744
OpenAlexW2938176811

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.