Evidence map›Paper›PMID 30996240›Full record

ArticleScientific reports2019

Enigmatic incongruence between mtDNA and nDNA revealed by multi-locus phylogenomic analyses in freshwater snails.

Takahiro Hirano, Takumi Saito, Yoshihiro Tsunamoto, Joichiro Koseki, Bin Ye, Van Tu Do, Osamu Miura, Yoshihisa Suyama, Satoshi Chiba

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Takahiro HiranoDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA. hirano0223t@yahoo.co.jp.
Takumi SaitoGraduate school of Life Sciences, Tohoku University, Miyagi, Japan.ORCID http://orcid.org/0000-0003-1400-4523
Yoshihiro TsunamotoKawatabi Field Science Center, Graduate School of Agricultural Science, Tohoku University, Miyagi, Japan.
Joichiro KosekiGraduate school of Life Sciences, Tohoku University, Miyagi, Japan.
Bin YeGraduate school of Life Sciences, Tohoku University, Miyagi, Japan.
Van Tu DoInstitute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Hanoi, Vietnam.
Osamu MiuraFaculty of Agriculture and Marine Science, Kochi University, Kochi, Japan.
Yoshihisa SuyamaKawatabi Field Science Center, Graduate School of Agricultural Science, Tohoku University, Miyagi, Japan.
Satoshi ChibaGraduate school of Life Sciences, Tohoku University, Miyagi, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phylogenetic incongruence has frequently been encountered among different molecular markers. Recent progress in molecular phylogenomics has provided detailed and important information for evolutionary biology and taxonomy. Here we focused on the freshwater viviparid snails (Cipangopaludina chinensis chinensis and C. c. laeta) of East Asia. We conducted phylogenetic analyses and divergence time estimation using two mitochondrial markers. We also performed population genetic analyses using genome-wide SNPs. We investigated how and which phylogenetic patterns reflect shell morphology. The results showed these two species could be separated into four major mitochondrial clades, whereas the nuclear clusters supported two groups. The phylogenetic patterns of both mtDNA and nDNA largely reflected the geographical distribution. Shell morphology reflected the phylogenetic clusters based on nDNA. The findings also showed these two species diversified in the Pliocene to early Pleistocene era, and occurred introgressive hybridisation. The results also raise the taxonomic issue of the two species.

Indexed as

Genetic LociPhylogenyAnimalsAnimal ShellsAsia, EasternCell NucleusDNA, MitochondrialEvolution, MolecularGenetics, PopulationHigh-Throughput Nucleotide SequencingMitochondriaPolymorphism, Single NucleotideSequence Analysis, DNASnailsDNA, Mitochondrial

Identifiers

PMID30996240
PMCPMC6470147

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.