Evidence map›Paper›PMID 30996093›Full record

ArticleJournal of virology2019

A Genome-Wide Haploid Genetic Screen Identifies Heparan Sulfate-Associated Genes and the Macropinocytosis Modulator TMED10 as Factors Supporting Vaccinia Virus Infection.

Rutger D Luteijn, Ferdy van Diemen, Vincent A Blomen, Ingrid G J Boer, Saravanan Manikam Sadasivam, Toin H van Kuppevelt, Ingo Drexler, Thijn R Brummelkamp, Robert Jan Lebbink, Emmanuel J Wiertz

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 38 citations in OpenAlex.

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  13. The evolving epidemiology of monkeypox virus.Cytokine & growth factor reviews · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Rutger D LuteijnDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands.
Ferdy van DiemenDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands.
Vincent A BlomenNetherlands Cancer Institute, Amsterdam, The Netherlands.
Ingrid G J BoerDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands.
Saravanan Manikam SadasivamDepartment of Membrane Biochemistry and Biophysics, Utrecht University, Utrecht, The Netherlands.
Toin H van KuppeveltDepartment of Biochemistry, Radboud University Medical Center, Nijmegen, The Netherlands.
Ingo DrexlerInstitute for Virology, Universitätsklinikum Düsseldorf, Heinrich Heine University, Düsseldorf, Germany.
Thijn R BrummelkampNetherlands Cancer Institute, Amsterdam, The Netherlands.
Robert Jan Lebbink *Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands.
Emmanuel J Wiertz *Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands ewiertz@umcutrecht.nl.
University Medical Center Utrecht · NLOncode Institute · NLDüsseldorf University Hospital · DERadboud University Nijmegen · NLUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vaccinia virus is a promising viral vaccine and gene delivery candidate and has historically been used as a model to study poxvirus-host cell interactions. We employed a genome-wide insertional mutagenesis approach in human haploid cells to identify host factors crucial for vaccinia virus infection. A library of mutagenized HAP1 cells was exposed to modified vaccinia virus Ankara (MVA). Deep-sequencing analysis of virus-resistant cells identified host factors involved in heparan sulfate synthesis, Golgi organization, and vesicular protein trafficking. We validated EXT1, TM9SF2, and TMED10 (TMP21/p23/p24δ) as important host factors for vaccinia virus infection. The critical roles of EXT1 in heparan sulfate synthesis and vaccinia virus infection were confirmed. TM9SF2 was validated as a player mediating heparan sulfate expression, explaining its contribution to vaccinia virus infection. In addition, TMED10 was found to be crucial for virus-induced plasma membrane blebbing and phosphatidylserine-induced macropinocytosis, presumably by regulating the cell surface expression of the TAM receptor Axl.

Indexed as

HaploidyCell Line, TumorCowpox virusCRISPR-Cas SystemsDNA VirusesExostosin 1Gene Knockout TechniquesGenetic TestingGolgi ApparatusHEK293 CellsHeLa CellsHeparan SulfateHost-Pathogen InteractionsHost SpecificityHumansMembrane ProteinsExostosin 1Heparan SulfateMembrane ProteinsN-AcetylglucosaminyltransferasesPhosphatidylserinesTM9SF2 protein, humanVesicular Transport Proteinsgenome-wide screenheparan sulfatemacropinocytosisphosphatidylserinepoxvirusTMED10vaccinia virus

Identifiers

PMID30996093
PMCPMC6580964
OpenAlexW2935796834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.