Evidence map›Paper›PMID 30995943›Full record

ArticleBreast cancer research : BCR2019

BRCA1 mutations attenuate super-enhancer function and chromatin looping in haploinsufficient human breast epithelial cells.

Xiaowen Zhang, Yao Wang, Huai-Chin Chiang, Yuan-Pang Hsieh, Chang Lu, Ben Ho Park, Ismail Jatoi, Victor X Jin, Yanfen Hu, Rong Li

Open access · goldAbstract read
In one paragraph

Article in Breast cancer research : BCR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Acta pharmaceutica Sinica. B · 2025
    Article
  4. Epigenetic drugs in cancer therapy.Cancer metastasis reviews · 2025
    Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. BRCA1 deficiency in mature CD8Journal for immunotherapy of cancer · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Cell-type-specific epigenomic variations associated withNAR genomics and bioinformatics · 2022
    Article
  15. Review
  16. Super-enhancers: a new frontier for epigenetic modifiers in cancer chemoresistance.Journal of experimental & clinical cancer research : CR · 2021
    Review
  17. Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Xiaowen ZhangDepartment of Biochemistry & Molecular Medicine, School of Medicine & Health Sciences, The George Washington University, Washington, DC, 20037, USA.
Yao WangDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Huai-Chin ChiangDepartment of Biochemistry & Molecular Medicine, School of Medicine & Health Sciences, The George Washington University, Washington, DC, 20037, USA.
Yuan-Pang HsiehDepartment of Chemical Engineering, Virginia Tech, Blacksburg, VA, 24061, USA.
Chang LuDepartment of Chemical Engineering, Virginia Tech, Blacksburg, VA, 24061, USA.
Ben Ho ParkVanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.
Ismail JatoiDepartment of Surgery, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA.
Victor X JinDepartment of Molecular Medicine, University of Texas Health Science Center at San Antonio, San Antonio, TX, 78229, USA. jinv@uthscsa.edu.
Yanfen HuDepartment of Anatomy & Cell Biology, School of Medicine & Health Sciences, The George Washington University, Washington, DC, 20037, USA. huy3@gwu.edu.
Rong LiDepartment of Biochemistry & Molecular Medicine, School of Medicine & Health Sciences, The George Washington University, Washington, DC, 20037, USA. rli69@gwu.edu.
George Washington University · USThe University of Texas Health Science Center at San Antonio · USVirginia Tech · USVanderbilt University Medical Center · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Systems Analysis of Epigenomic Architecture in Cancer ProgressionU54CA217297 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HUANG, TIM H.-M. · 2017 to 2021
$9.3M
Cancer Biology Training ProgramT32CA148724 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Pei Wang, Feng-Chun Yang · 2011 to 2026
$3.3M
Omics analysis of three-dimensional transcriptional regulationR01GM114142 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI JIN, VICTOR, LIN, SHILI · 2015 to 2024
$2.7M
Crosstalk between BRCA1 and Transcription in Breast CancerR01CA220578 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LI, RONG · 2017 to 2022
$2.1M
Role of BRCA1 phosphorylation in DNA DSB repair and genome stability maintenanceR01CA212674 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI HU, YANFEN, LI, RONG · 2017 to 2022
$1.9M
Next-generation MOWChIP-seq for high-throughput epigenomic profiling using clinically relevant samplesR33CA214176 · NCI · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI LU, CHANG · 2017 to 2019
$1.2M
High Throughput DNA Sequencer: Illumina HiSeq 3000 SequencerS10OD021805 · OD · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LAI, ZHAO · 2016 to 2016
$600k
NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA212674NCI NIH HHS R01 CA220578NCI NIH HHS R33 CA214176NCI NIH HHS T32 CA148724NCI NIH HHS U54 CA217297NIGMS NIH HHS R01 GM114142NIH HHS S10 OD021805
6 · The paper itself

Abstract

backgroundBRCA1-associated breast cancer originates from luminal progenitor cells. BRCA1 functions in multiple biological processes, including double-strand break repair, replication stress suppression, transcriptional regulation, and chromatin reorganization. While non-malignant cells carrying cancer-predisposing BRCA1 mutations exhibit increased genomic instability, it remains unclear whether BRCA1 haploinsufficiency affects transcription and chromatin dynamics in breast epithelial cells.

methodsH3K27ac-associated super-enhancers were compared in primary breast epithelial cells from BRCA1 mutation carriers (BRCA1

resultsHere, we show that primary mammary epithelial cells from women with BRCA1 mutations display significant loss of H3K27ac-associated super-enhancers. These BRCA1-dependent super-enhancers are enriched with binding motifs for the GATA family. Non-tumorigenic BRCA1

conclusionsH3K27ac-associated super-enhancer loss is a previously unappreciated functional deficiency in ostensibly normal BRCA1 mutation-carrying breast epithelium. Our findings offer new mechanistic insights into BRCA1 mutation-associated transcriptional and epigenetic abnormality in breast epithelial cells and tissue/cell lineage-specific tumorigenesis.

Indexed as

Enhancer Elements, GeneticGenes, BRCA1HaploinsufficiencyMutationBinding SitesBiomarkers, TumorCell LineCell Transformation, NeoplasticChromatinChromatin ImmunoprecipitationComputational BiologyEpithelial CellsGenomic InstabilityHigh-Throughput Nucleotide SequencingHistonesHumansBiomarkers, TumorChromatinHistonesBRCA1Breast epithelial cellsChromatin loopingEpigeneticsSuper-enhancerTranscription

Identifiers

PMID30995943
PMCPMC6472090
OpenAlexW2941358929

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.