Evidence map›Paper›PMID 30995906›Full record

ArticleBMC plant biology2019

Evolutionary conservation of MLO gene promoter signatures.

Giuseppe Andolfo, Paolo Iovieno, Luigi Ricciardi, Concetta Lotti, Edgardo Filippone, Stefano Pavan, Maria Raffaella Ercolano

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  4. Expression ofPlants (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Giuseppe AndolfoDepartment of Agricultural Sciences, University of Naples "Federico II", Via Università 100, 80055, Portici (Naples), Italy.
Paolo IovienoDepartment of Agricultural Sciences, University of Naples "Federico II", Via Università 100, 80055, Portici (Naples), Italy.
Luigi RicciardiDepartment of Soil, Plant and Food Science, University of Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy.
Concetta LottiDepartment of Agriculture, Food and Environmental Science, University of Foggia, via Napoli 25, 71100, Foggia, Italy.
Edgardo FilipponeDepartment of Agricultural Sciences, University of Naples "Federico II", Via Università 100, 80055, Portici (Naples), Italy.
Stefano PavanDepartment of Soil, Plant and Food Science, University of Bari "Aldo Moro", Via Amendola 165/A, 70126, Bari, Italy. stefano.pavan@uniba.it.
Maria Raffaella ErcolanoDepartment of Agricultural Sciences, University of Naples "Federico II", Via Università 100, 80055, Portici (Naples), Italy. ercolano@unina.it.
University of Naples Federico II · ITUniversity of Bari Aldo Moro · ITUniversity of Foggia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPowdery mildew (PM) is a widespread fungal disease of plants in temperate climates, causing significant economic losses in agricultural settings. Specific homologs of the MLO gene family are PM susceptibility factors, as their loss-of function results in durable PM resistance (mlo resistance) in several plant species. The role of MLO susceptibility genes in plant-pathogen interactions is still elusive, however it is known that they are strongly upregulated following PM infection.

resultsIn this study, we investigated the structure of 414 Putative Promoter Regions (PPRs) of MLO genes and highlighted motif and regulatory element patterns related to genomic relationships among species and phylogenetic distance among homologs. A TC box-like motif and a thymine-rich motif were found to be overrepresented in MLO genes transcriptionally upregulated upon infection with PM fungi. As proof of concept, we showed that the expression of a melon (Cucumis melo L.) gene enriched for the motifs above mentioned was strongly upregulated upon infection with the PM fungus Podosphaera xanthii.

conclusionWhile identifying a candidate MLO susceptibility gene in melon, this study provides insight on the transcriptional control of MLO genes and indicates diagnostic features useful to identify MLO susceptibility genes across species affected by the PM disease.

Indexed as

Evolution, MolecularGenes, PlantPromoter Regions, GeneticAscomycotaBase SequenceComputational BiologyConserved SequenceCucurbitaceaeGene Expression Regulation, PlantNucleotide MotifsPhylogenyPlant DiseasesRNA, MessengerTranscription, GeneticUp-RegulationRNA, MessengerCis-acting regulatory elementMLOMotifPowdery mildew resistanceTranscription

Identifiers

PMID30995906
PMCPMC6471879
OpenAlexW2944376317

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.