Evidence map›Paper›PMID 30995076›Full record

ReviewAmerican journal of respiratory cell and molecular biology2019

The Human Lung Cell Atlas: A High-Resolution Reference Map of the Human Lung in Health and Disease.

Herbert B Schiller, Daniel T Montoro, Lukas M Simon, Emma L Rawlins, Kerstin B Meyer, Maximilian Strunz, Felipe A Vieira Braga, Wim Timens, Gerard H Koppelman, G R Scott Budinger and 10 more

Open access · greenAbstract readReview
In one paragraph

Review in American journal of respiratory cell and molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 136 papers.

0numbers the graph read from it
0cells of the map it votes in
136citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

136 citing papers in PubMed, 258 citations in OpenAlex.

  1. Review
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  11. Deep learning‑based cell type prediction in lung tissue from brightfield histology using CODEX-derived labels.Proceedings of SPIE--the International Society for Optical Engineering · 2026
    Article
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  19. The bronchoalveolar proteome changes in obesity.American journal of physiology. Lung cellular and molecular physiology · 2025
    Article
  20. Article

76 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 4 countries.

Herbert B Schiller1 Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Systems Medicine of Chronic Lung Disease, Member of the German Center for Lung Research (DZL), Munich, Germany.
Daniel T Montoro2 Harvard Stem Cell Institute, Cambridge, Massachusetts.ORCID 0000-0002-6222-2149
Lukas M Simon4 Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Germany.
Emma L Rawlins5 Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-7426-3792
Kerstin B Meyer6 Wellcome Sanger Institute, Hinxton, Cambridge, United Kingdom.ORCID 0000-0001-5906-1498
Maximilian Strunz1 Helmholtz Zentrum München, Institute of Lung Biology and Disease, Group Systems Medicine of Chronic Lung Disease, Member of the German Center for Lung Research (DZL), Munich, Germany.
Felipe A Vieira Braga6 Wellcome Sanger Institute, Hinxton, Cambridge, United Kingdom.
Wim Timens7 Department of Pathology and Medical Biology.ORCID 0000-0002-4146-6363
Gerard H Koppelman9 Department of Pediatric Pulmonology and Pediatric Allergology, Beatrix Children's Hospital, and.ORCID 0000-0001-8567-3252
G R Scott Budinger10 Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, Illinois.
Janette K Burgess7 Department of Pathology and Medical Biology.
Avinash Waghray2 Harvard Stem Cell Institute, Cambridge, Massachusetts.
Maarten van den Berge11 Department of Pulmonology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Fabian J Theis4 Helmholtz Zentrum München, German Research Center for Environmental Health, Institute of Computational Biology, Neuherberg, Germany.
Aviv Regev13 Klarman Cell Observatory, Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts.
Naftali Kaminski15 Pulmonary, Critical Care and Sleep Medicine, Yale School of Medicine, New Haven, Connecticut.
Jayaraj Rajagopal2 Harvard Stem Cell Institute, Cambridge, Massachusetts.
Sarah A Teichmann6 Wellcome Sanger Institute, Hinxton, Cambridge, United Kingdom.
Alexander V Misharin10 Division of Pulmonary and Critical Care Medicine, Northwestern University, Chicago, Illinois.
Martijn C Nawijn7 Department of Pathology and Medical Biology.ORCID 0000-0003-3372-6521
University Medical Center Groningen · NLHelmholtz Zentrum München · DEMassachusetts General Hospital · USWellcome Sanger Institute · GBNorthwestern University · USBroad Institute · USUniversity of Cambridge · GBYale University · US

Funding

Role of LUBAC and Na K-ATPase in Acute Lung InjuryP01HL071643 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SZNAJDER, JACOB I · 2003 to 2019
$30.8M
Tissue resident macrophages regulate proteostasis in the aging lungP01AG049665 · NIA · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Benjamin David Singer · 2015 to 2026
$26.9M
Technology CoreU19AI135964 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RICHARD G WUNDERINK · 2018 to 2026
$24.7M
Genomic Analysis of Tissue and Cellular Heterogeneity in IPFR01HL127349 · NHLBI · YALE UNIVERSITY · PI BENOS, PANAGIOTIS V, KAMINSKI, NAFTALI · 2015 to 2025
$5.9M
Alveolar DevMAPU01HL122626 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI AMBALAVANAN, NAMASIVAYAM, HAGOOD, JAMES S. · 2014 to 2018
$3.7M
Epithelial Protective Effects of Thyroid Hormone Signaling in FibrosisR01HL141852 · NHLBI · YALE UNIVERSITY · PI KAMINSKI, NAFTALI · 2019 to 2022
$3.4M
Signaling in the lung induced by particulate matter air pollutionR01ES013995 · NIEHS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BUDINGER, GR SCOTT · 2006 to 2015
$3.3M
Use of the Src Family Kinase Inhibitor Saracatinib in the Treatment of Pulmonary FibrosisUG3TR002445 · NCATS · NATIONAL JEWISH HEALTH · PI DOWNEY, GREGORY PAUL, DUDLEY, JOEL THOMAS · 2018 to 2018
$854k
Differential role of tissue-resident and monocyte-derived alveolar macrophages in the development of pulmonary fibrosisR56HL135124 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MISHARIN, ALEXANDER · 2017 to 2017
$460k
The Role of Mitochondrial Reactive Oxygen Species in TGF-Beta SignalingI01BX000201 · VA · JESSE BROWN VA MEDICAL CENTER · PI BUDINGER, GR SCOTT, JAIN, MANU · 2011 to 2017
–
BLRD VA I01 BX000201Medical Research Council G0900424Medical Research Council MR/P009581/1Medical Research Council MR/S035907/1NCATS NIH HHS UG3 TR002445NHLBI NIH HHS P01 HL071643NHLBI NIH HHS R01 HL127349NHLBI NIH HHS R01 HL141852NHLBI NIH HHS R56 HL135124NHLBI NIH HHS U01 HL122626NIAID NIH HHS U19 AI135964NIA NIH HHS P01 AG049665NIEHS NIH HHS R01 ES013995
6 · The paper itself

Abstract

Lung disease accounts for every sixth death globally. Profiling the molecular state of all lung cell types in health and disease is currently revolutionizing the identification of disease mechanisms and will aid the design of novel diagnostic and personalized therapeutic regimens. Recent progress in high-throughput techniques for single-cell genomic and transcriptomic analyses has opened up new possibilities to study individual cells within a tissue, classify these into cell types, and characterize variations in their molecular profiles as a function of genetics, environment, cell-cell interactions, developmental processes, aging, or disease. Integration of these cell state definitions with spatial information allows the in-depth molecular description of cellular neighborhoods and tissue microenvironments, including the tissue resident structural and immune cells, the tissue matrix, and the microbiome. The Human Cell Atlas consortium aims to characterize all cells in the healthy human body and has prioritized lung tissue as one of the flagship projects. Here, we present the rationale, the approach, and the expected impact of a Human Lung Cell Atlas.

Indexed as

HumansLungLung DiseasesTranscriptomeHuman Cell Atlassingle-cell RNA sequencingspatial transcriptomicssystems biology

Identifiers

PMID30995076
PMCPMC6604220
OpenAlexW2940024093

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.