Evidence map›Paper›PMID 30992377›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Select sequencing of clonally expanded CD8

Huang Huang, Michael J Sikora, Saiful Islam, Roshni Roy Chowdhury, Yueh-Hsiu Chien, Thomas J Scriba, Mark M Davis, Lars M Steinmetz

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  7. Review
  8. Review
  9. Article
  10. Review
  11. Specific CD4Nature immunology · 2024
    Article
  12. Article
  13. iScience · 2024
    Article
  14. Review
  15. The molecular mechanisms of CD8Frontiers in immunology · 2024
    Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Huang HuangDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305.
Michael J SikoraDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305.
Saiful IslamDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305.
Roshni Roy ChowdhuryDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305.
Yueh-Hsiu ChienDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305.
Thomas J ScribaSouth African Tuberculosis Vaccine Initiative, Institute of Infectious Disease and Molecular Medicine and Division of Immunology, Department of Pathology, University of Cape Town, Cape Town 7925, South Africa.ORCID 0000-0002-0641-1359
Mark M DavisDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305; mmdavis@stanford.edu Lars.Steinmetz@stanford.edu.
Lars M SteinmetzDepartment of Genetics, Stanford University School of Medicine, Stanford, CA 94305; mmdavis@stanford.edu Lars.Steinmetz@stanford.edu.
Stanford University · USEuropean Molecular Biology Laboratory · DEHoward Hughes Medical Institute · USUniversity of Cape Town · ZA

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
NIAID NIH HHS U19 AI057229
6 · The paper itself

Abstract

To permit the recognition of antigens, T cells generate a vast diversity of T cell receptor (TCR) sequences. Upon binding of the TCR to an antigen-MHC complex, T cells clonally expand to establish an immune response. To study antigen-specific T cell clonality, we have developed a method that allows selection of rare cells, based on RNA expression, before in-depth scRNA-seq (named SELECT-seq). We applied SELECT-seq to collect both TCR sequences and then transcriptomes from single cells of peripheral blood lymphocytes activated by a

Indexed as

AntigensBase SequenceCD8-Positive T-LymphocytesCells, CulturedClonal Selection, Antigen-MediatedCytokinesHumansLymphocyte ActivationMucosal-Associated Invariant T CellsNatural Killer T-CellsReceptors, Antigen, T-CellSequence AnalysisSequence Analysis, RNAAntigensCytokinesReceptors, Antigen, T-CelliNKTMAITsenescencesingle-cell transcriptomicsT cell

Identifiers

PMID30992377
PMCPMC6500157
OpenAlexW2937667996

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.