Evidence map›Paper›PMID 30992352›Full record

ArticlemBio2019

Reply to Holmes and Duchêne, "Can Sequence Phylogenies Safely Infer the Origin of the Global Virome?": Deep Phylogenetic Analysis of RNA Viruses Is Highly Challenging but Not Meaningless.

Yuri I Wolf, Darius Kazlauskas, Jaime Iranzo, Adriana Lucía-Sanz, Jens H Kuhn, Mart Krupovic, Valerian V Dolja, Eugene V Koonin

Abstract readLetterComment
PubMed Full text at PMC Publisher
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. The RNA virosphere: How big and diverse is it?Environmental microbiology · 2023
    Article
  3. Review
  4. The origins of COVID-19 pandemic: A brief overview.Transboundary and emerging diseases · 2022
    Review
  5. Revised Taxonomy of Rhabdoviruses Infecting Fish and Marine Mammals.Animals : an open access journal from MDPI · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Global Organization and Proposed Megataxonomy of the Virus World.Microbiology and molecular biology reviews : MMBR · 2020
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Yuri I WolfNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA wolf@ncbi.nlm.nih.gov.ORCID 0000-0002-0247-8708
Darius KazlauskasInstitute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.
Jaime IranzoNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Adriana Lucía-SanzNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.
Jens H KuhnIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, Maryland, USA.ORCID 0000-0002-7800-6045
Mart KrupovicUnité Biologie Moléculaire du Gène chez les Extrêmophiles, Institut Pasteur, Paris, France.ORCID 0000-0001-5486-0098
Valerian V DoljaDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, USA.
Eugene V KooninNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, USA.ORCID 0000-0003-3943-8299

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Evolution, MolecularPhylogenyRNA VirusesphylogenomicsRNA-dependent RNA polymeraseRNA viromevirus classificationvirus evolution

Identifiers

PMID30992352
PMCPMC6469970

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.