Evidence map›Paper›PMID 30992059›Full record

ArticleEpigenetics & chromatin2019

DNMT and HDAC inhibitors modulate MMP-9-dependent H3 N-terminal tail proteolysis and osteoclastogenesis.

Yonghwan Shin, Nikhil B Ghate, Byoungsan Moon, Kyungpyo Park, Wange Lu, Woojin An

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Role and Regulation of Transcription Factors in Osteoclastogenesis.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Nuclear mechanosensing controls MSC osteogenic potential through HDAC epigenetic remodeling.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Regulatory Role of RNA NFrontiers in endocrinology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Yonghwan ShinDepartment of Biochemistry and Molecular Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90089, USA.
Nikhil B GhateDepartment of Biochemistry and Molecular Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90089, USA.
Byoungsan MoonDepartment of Stem Cell Biology and Regenerative Medicine, Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA, 90089, USA.
Kyungpyo ParkDepartment of Physiology, School of Dentistry, Seoul National University, Seoul, 110-749, Korea.
Wange LuDepartment of Stem Cell Biology and Regenerative Medicine, Broad Center for Regenerative Medicine and Stem Cell Research, University of Southern California, Los Angeles, CA, 90089, USA.
Woojin AnDepartment of Biochemistry and Molecular Medicine, Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90089, USA. woojinan@usc.edu.
University of Southern California · USBroad Center · USSeoul National University · KR

Funding

Role of histone kinase VprBP in gene silencing: mechanisms, targets, and regulationR01CA201561 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AN, WOOJIN · 2016 to 2020
$1.9M
Epigenetic Regulation of Osteoclastogenic Gene Expression: Factors, Targets, and MechanismsR01AR073233 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AN, WOOJIN · 2019 to 2024
$1.8M
NCI NIH HHS CA201561NCI NIH HHS R01 CA201561NIAMS NIH HHS R01 AR073233
6 · The paper itself

Abstract

backgroundMMP-9-dependent proteolysis of histone H3 N-terminal tail (H3NT) is an important mechanism for activation of gene expression during osteoclast differentiation. Like other enzymes targeting their substrates within chromatin structure, MMP-9 enzymatic activity toward H3NT is tightly controlled by histone modifications such as H3K18 acetylation (H3K18ac) and H3K27 monomethylation (H3K27me1). Growing evidence indicates that DNA methylation is another epigenetic mechanism controlling osteoclastogenesis, but whether DNA methylation is also critical for regulating MMP-9-dependent H3NT proteolysis and gene expression remains unknown.

resultsWe show here that treating RANKL-induced osteoclast progenitor (OCP) cells with the DNMT inhibitor 5-Aza-2'-deoxycytidine (5-Aza-CdR) induces CpG island hypomethylation and facilitates MMP-9 transcription. This increase in MMP-9 expression results in a significant enhancement of H3NT proteolysis and OCP cell differentiation. On the other hand, despite an increase in levels of H3K18ac, treatment with the HDAC inhibitor trichostatin A (TSA) leads to impairment of osteoclastogenic gene expression. Mechanistically, TSA treatment of OCP-induced cells stimulates H3K27ac with accompanying reduction in H3K27me1, which is a key modification to facilitate stable interaction of MMP-9 with nucleosomes for H3NT proteolysis. Moreover, hypomethylated osteoclastogenic genes in 5-Aza-CdR-treated cells remain transcriptionally inactive after TSA treatment, because H3K27 is highly acetylated and cannot be modified by G9a.

conclusionsThese findings clearly indicate that DNA methylation and histone modification are important mechanisms in regulating osteoclastogenic gene expression and that their inhibitors can be used as potential therapeutic tools for treating bone disorders.

Indexed as

Cell DifferentiationOsteogenesisProteolysisAnimalsBone Marrow CellsCells, CulturedDNA (Cytosine-5-)-MethyltransferasesHistone Deacetylase InhibitorsHistonesMatrix Metalloproteinase 9MiceMice, Inbred C57BLOsteoclastsDNA (Cytosine-5-)-MethyltransferasesHistone Deacetylase InhibitorsHistonesMatrix Metalloproteinase 9Mmp9 protein, mouse5-Aza-dCDNA methylationH3 proteolysisMMP-9Osteoclast differentiationTSA

Identifiers

PMID30992059
PMCPMC6466663
OpenAlexW2941465813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.