Evidence map›Paper›PMID 30989425›Full record

ArticleFamilial cancer2019

Implication of DNA repair genes in Lynch-like syndrome.

Rosa M Xicola, Julia R Clark, Timothy Carroll, Jurgis Alvikas, Priti Marwaha, Maureen R Regan, Francesc Lopez-Giraldez, Jungmin Choi, Rajyasree Emmadi, Victoria Alagiozian-Angelova and 3 more

Open access · greenAbstract read
In one paragraph

Article in Familial cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Clinicopathological characteristics of Lynch-like syndrome.International journal of clinical oncology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Journal of gynecologic oncology · 2021
    Article
  17. Article
  18. Review
  19. Article
  20. Clinicopathological significance of deficient DNA mismatch repair and MLH1 promoter methylation in endometrioid endometrial carcinoma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 1 country.

Rosa M XicolaDepartment of Internal Medicine and Cancer Center, Yale University School of Medicine, P. O. Box 208019, 333 Cedar Street/LMP 1080, New Haven, CT, 06520-8019, USA.
Julia R ClarkDepartment of Medicine and Cancer Center, University of Illinois at Chicago, 1020N CSB, Chicago, IL, 60612, USA.
Timothy CarrollDepartment of Medicine and Cancer Center, University of Illinois at Chicago, 1020N CSB, Chicago, IL, 60612, USA.
Jurgis AlvikasDepartment of Medicine and Cancer Center, University of Illinois at Chicago, 1020N CSB, Chicago, IL, 60612, USA.
Priti MarwahaDepartment of Medicine and Cancer Center, University of Illinois at Chicago, 1020N CSB, Chicago, IL, 60612, USA.
Maureen R ReganDepartment of Medicine and Cancer Center, University of Illinois at Chicago, 1020N CSB, Chicago, IL, 60612, USA.
Francesc Lopez-GiraldezYale Center for Genome Analysis, Yale University, 830 West Campus Drive, Orange, CT, 06477, USA.
Jungmin ChoiDepartment of Genetics and Yale Center for Genome Analysis, Yale University School of Medicine, 830 West Campus Drive, Orange, CT, 06477, USA.
Rajyasree EmmadiDepartment of Pathology, University of Illinois at Chicago, 840 S. Wood St., Suite 130 CSN, Chicago, IL, 60612, USA.
Victoria Alagiozian-AngelovaDepartment of Pathology, John H Stroger Jr. Hospital, 1969 Ogden Ave, Chicago, IL, 60612, USA.
Sonia S KupferCenter for Clinical Cancer Genetics, The University of Chicago, 900 East 57th Street, Chicago, IL, 60637, USA.
Nathan A EllisDepartment of Cellular and Molecular Medicine, University of Arizona, 1515 N. Campbell Ave., Tucson, AZ, 85724-5024, USA.
Xavier LlorDepartment of Internal Medicine and Cancer Center, Yale University School of Medicine, P. O. Box 208019, 333 Cedar Street/LMP 1080, New Haven, CT, 06520-8019, USA. xavier.llor@yale.edu.ORCID 0000-0002-6259-185X
University of Illinois Chicago · USYale Cancer Center · USYale University · USJohn H. Stroger, Jr. Hospital of Cook County · USUniversity of Arizona · USUniversity of Chicago · US

Funding

VITAMIN AP30CA023074 · NCI · UNIVERSITY OF ARIZONA · PI Dan Theodorescu · 1985 to 2026
$110.2M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Colonic responses to vitamin D and aspirin in African- and European-AmericansR01CA220329 · NCI · UNIVERSITY OF CHICAGO · PI KUPFER, SONIA · 2018 to 2022
$1.9M
Genetic risk factors in African American colorectal cancer patientsU01CA153060 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI ELLIS, NATHAN A. · 2010 to 2014
$1.7M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
New DNA repair alterations in hereditary cancer developmentK01CA204431 · NCI · YALE UNIVERSITY · PI XICOLA, ROSA MUNOZ · 2017 to 2019
$522k
NCATS NIH HHS UL1 TR001863NCI NIH HHS K01 CA204431NCI NIH HHS P30 CA023074NCI NIH HHS R01 CA220329NCI NIH HHS U01 CA153060NIH HHS S10 OD018521
6 · The paper itself

Abstract

Many colorectal cancers (CRCs) that exhibit microsatellite instability (MSI) are not explained by MLH1 promoter methylation or germline mutations in mismatch repair (MMR) genes, which cause Lynch syndrome (LS). Instead, these Lynch-like syndrome (LLS) patients have somatic mutations in MMR genes. However, many of these patients are young and have relatives with cancer, suggesting a hereditary entity. We performed germline sequence analysis in LLS patients and determined their tumor's mutational profiles using FFPE DNA. Six hundred and fifty-four consecutive CRC patients were screened for suspected LS using MSI and absence of MLH1 methylation. Suspected LS cases were exome sequenced to identify germline and somatic mutations. Single nucleotide variants were used to characterize mutational signatures. We identified 23 suspected LS cases. Germline sequence analysis of 16 available samples identified five cases with LS mutations and 11 cases without LS mutations, LLS. Most LLS tumors had a combination of somatic MMR gene mutation and loss of heterozygosity. LLS patients were relatively young and had excess first-degree relatives with cancer. Four of the 11 LLS patients had rare likely pathogenic variants in genes that maintain genome integrity. Moreover, tumors from this group had a distinct mutational signature compared to tumors from LLS patients lacking germline mutations in these genes. In summary, more than a third of the LLS patients studied had germline mutations in genes that maintain genome integrity and their tumors had a distinct mutational signature. The possibility of hereditary factors in LLS warrants further studies so counseling can be properly informed.

Indexed as

DNA Mismatch RepairGerm-Line MutationAdultAgedAged, 80 and overColorectal Neoplasms, Hereditary NonpolyposisDNA-Binding ProteinsDNA MethylationFemaleHeterozygoteHumansMaleMicrosatellite InstabilityMiddle AgedMismatch Repair Endonuclease PMS2MutL Protein Homolog 1DNA-Binding ProteinsG-T mismatch-binding proteinMismatch Repair Endonuclease PMS2MLH1 protein, humanMSH2 protein, humanMutL Protein Homolog 1MutS Homolog 2 ProteinPMS2 protein, humanColorectal cancerDNA repair genesLynch-like syndromeLynch syndromeLynch syndrome-like

Identifiers

PMID30989425
PMCPMC6561810
OpenAlexW2937761669

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.