Evidence map›Paper›PMID 30989420›Full record

ArticleClinical and experimental nephrology2019

Mutation analyses by next-generation sequencing and multiplex ligation-dependent probe amplification in Japanese autosomal dominant polycystic kidney disease patients.

Toshio Mochizuki, Atsuko Teraoka, Hiroyuki Akagawa, Shiho Makabe, Taro Akihisa, Masayo Sato, Hiroshi Kataoka, Michihiro Mitobe, Toru Furukawa, Ken Tsuchiya and 1 more

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In one paragraph

Article in Clinical and experimental nephrology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Germline Mutations for Kidney Volume in ADPKD.Kidney international reports · 2022
    Article
  9. Review
  10. Article
  11. Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Toshio MochizukiDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan. mtoshi@twmu.ac.jp.ORCID http://orcid.org/0000-0002-3820-3191
Atsuko TeraokaDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Hiroyuki AkagawaTokyo Women's Medical University Institute for Integrated Medical Sciences (TIIMS), Tokyo, Japan.
Shiho MakabeDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Taro AkihisaDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Masayo SatoDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Hiroshi KataokaDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Michihiro MitobeDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Toru FurukawaTokyo Women's Medical University Institute for Integrated Medical Sciences (TIIMS), Tokyo, Japan.
Ken TsuchiyaDepartment of Blood Purification, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Kosaku NittaDepartment of Medicine, Kidney Center, Tokyo Women's Medical University, Tokyo, Japan.
Tokyo Women's Medical University · JPTohoku University · JP

Funding

Japan Society for the Promotion of Science JP 15K09279
6 · The paper itself

Abstract

backgroundAutosomal dominant polycystic kidney disease (ADPKD), one of the most common hereditary kidney diseases, causes gradual growth of cysts in the kidneys, leading to renal failure. Owing to the advanced technology of next-generation sequencing (NGS), genetic analyses of the causative genes PKD1 and PKD2 have been improved.

methodsWe performed genetic analyses of 111 Japanese ADPKD patients using hybridization-based NGS and long-range (LR)-PCR-based NGS. Additionally, genetic analyses in exon 1 of PKD1 using Sanger sequencing because of an extremely low coverage of NGS and those using multiplex ligation-dependent probe amplification (MLPA) were performed.

resultsThe detection rate using NGS for 111 patients was 86.5%. One mutation in exon 1 of PKD1 and five deletions detected by MLPA were identified. When combined, the total detection rate was 91.9%.

conclusionAlthough NGS is useful, we propose the addition of Sanger sequencing for exon 1 of PKD1 and MLPA as indispensable for identifying mutations not detected by NGS.

Indexed as

High-Throughput Nucleotide SequencingMultiplex Polymerase Chain ReactionMutationAsian PeopleDNA Mutational AnalysisExonsGenetic Predisposition to DiseaseHumansJapanPolycystic Kidney, Autosomal DominantPredictive Value of TestsRisk FactorsTRPP Cation ChannelsTRPP Cation ChannelsADPKDMLPANext-generation sequencingPKD1PKD2Polycystic kidney disease

Identifiers

PMID30989420
OpenAlexW2937377018

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.