Evidence map›Paper›PMID 30988671›Full record

ArticleFrontiers in genetics2019

Myometrial Transcriptional Signatures of Human Parturition.

Zachary Stanfield, Pei F Lai, Kaiyu Lei, Mark R Johnson, Andrew M Blanks, Roberto Romero, Mark R Chance, Sam Mesiano, Mehmet Koyutürk

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 33 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 2 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 2 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Pooled it
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  8. Evidence for the participation of CHCHD2/MNRR1, a mitochondrial protein, in spontaneous labor at term and in preterm labor with intra-amniotic infection.The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians · 2023
    Article
  9. A key role for NLRP3 signaling in preterm labor and birth driven by the alarmin S100B.Translational research : the journal of laboratory and clinical medicine · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Zachary StanfieldSystems Biology and Bioinformatics Program, Case Western Reserve University, Cleveland, OH, United States.
Pei F LaiImperial College Parturition Research Group, Department of Obstetrics and Gynecology, Imperial College School of Medicine, Chelsea and Westminster Hospital, London, United Kingdom.
Kaiyu LeiBGI Clinical Laboratories (Shenzhen) Co., Ltd, Shenzhen, China
Mark R JohnsonImperial College Parturition Research Group, Department of Obstetrics and Gynecology, Imperial College School of Medicine, Chelsea and Westminster Hospital, London, United Kingdom.
Andrew M BlanksCell and Developmental Biology, Clinical Sciences Research Laboratory, Division of Biomedical Sciences, Warwick Medical School, Coventry, United Kingdom
Roberto RomeroPerinatology Research Branch, NICHD, NIH, United States Department of Health and Human Services, Detroit, MI, United States.
Mark R ChanceDepartment of Nutrition, Case Western Reserve University, Cleveland, OH, United States.
Sam MesianoDepartment of Reproductive Biology, Case Western Reserve University, Cleveland, OH, United States.
Mehmet KoyutürkCenter for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, United States.
Case Western Reserve University · USBGI Group (China) · CNChelsea and Westminster Hospital · GBEunice Kennedy Shriver National Institute of Child Health and Human Development · USImperial College London · GBUniversity of Warwick · GB

Funding

The Role Of Subclinical Infection And Cytokines In Preterm ParturitionZIAHD002400 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI ROMERO, ROBERTO · 2009 to 2025
$254.4M
Theoretical Foundations and Software Infrastructure for Biological Network DatabasesU01CA198941 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI KOYUTURK, MEHMET · 2015 to 2017
$1.4M
NCI NIH HHS U01 CA198941
6 · The paper itself

Abstract

The process of parturition involves the transformation of the quiescent myometrium (uterine smooth muscle) to the highly contractile laboring state. This is thought to be driven by changes in gene expression in myometrial cells. Despite the existence of multiple myometrial gene expression studies, the transcriptional programs that initiate labor are not known. Here, we integrated three transcriptome datasets, one novel (NCBI Gene Expression Ominibus: GSE80172) and two existing, to characterize the gene expression changes in myometrium associated with the onset of labor at term. Computational analyses including classification, singular value decomposition, pathway enrichment, and network inference were applied to individual and combined datasets. Outcomes across studies were integrated with multiple protein and pathway databases to build a myometrial parturition signaling network. A high-confidence (significant across all studies) set of 126 labor genes were identified and machine learning models exhibited high reproducibility between studies. Labor signatures included both known (interleukins, cytokines) and unknown (apoptosis,

Indexed as

classificationgene expression networksinflammationmyometriumparturition

Identifiers

PMID30988671
PMCPMC6452569
OpenAlexW2926726148

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.