Evidence map›Paper›PMID 30988488›Full record

ArticleNature ecology & evolution2019

Medusozoan genomes inform the evolution of the jellyfish body plan.

Konstantin Khalturin, Chuya Shinzato, Maria Khalturina, Mayuko Hamada, Manabu Fujie, Ryo Koyanagi, Miyuki Kanda, Hiroki Goto, Friederike Anton-Erxleben, Masaya Toyokawa and 2 more

Erratum issuedOpen access · hybridAbstract read
PubMed Publisher
In one paragraph

Article in Nature ecology & evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
27.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 141 citations in OpenAlex.

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  19. Evolution of the Cdk4/6-Cdkn2 system in invertebrates.Genes to cells : devoted to molecular & cellular mechanisms · 2024
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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Konstantin KhalturinMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan. konstantin.khalturin@oist.jp.ORCID http://orcid.org/0000-0003-4359-2993
Chuya ShinzatoMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Maria KhalturinaMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Mayuko HamadaMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Manabu FujieDNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Ryo KoyanagiDNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.ORCID http://orcid.org/0000-0002-9694-0288
Miyuki KandaDNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Hiroki GotoDNA Sequencing Section, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.
Friederike Anton-ErxlebenZoological Institute, Christian-Albrechts-Universität, Kiel, Germany.
Masaya ToyokawaSeikai National Fisheries Research Institute, Nagasaki, Japan.
Sho ToshinoTropical Biosphere Research Center, University of the Ryukyus, Sesoko, Okinawa, Japan.
Noriyuki SatohMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Okinawa, Japan.ORCID http://orcid.org/0000-0002-8520-8876
Okinawa Institute of Science and Technology Graduate University · JPChristian-Albrechts-Universität zu Kiel · DEJapan Fisheries Research and Education Agency · JPUniversity of the Ryukyus · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cnidarians are astonishingly diverse in body form and lifestyle, including the presence of a jellyfish stage in medusozoans and its absence in anthozoans. Here, we sequence the genomes of Aurelia aurita (a scyphozoan) and Morbakka virulenta (a cubozoan) to understand the molecular mechanisms responsible for the origin of the jellyfish body plan. We show that the magnitude of genetic differences between the two jellyfish types is equivalent, on average, to the level of genetic differences between humans and sea urchins in the bilaterian lineage. About one-third of Aurelia genes with jellyfish-specific expression have no matches in the genomes of the coral and sea anemone, indicating that the polyp-to-jellyfish transition requires a combination of conserved and novel, medusozoa-specific genes. While no genomic region is specifically associated with the ability to produce a jellyfish stage, the arrangement of genes involved in the development of a nematocyte-a phylum-specific cell type-is highly structured and conserved in cnidarian genomes; thus, it represents a phylotypic gene cluster.

Indexed as

ScyphozoaSea AnemonesAnimalsGenomeGenomics

Identifiers

PMID30988488
OpenAlexW2940358008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.