Evidence map›Paper›PMID 30988472›Full record

ArticleNature biomedical engineering2019

A quantitative analysis of heterogeneities and hallmarks in acute myelogenous leukaemia.

C W Hu, Y Qiu, A Ligeralde, A Y Raybon, S Y Yoo, K R Coombes, A A Qutub, S M Kornblau

Abstract read
In one paragraph

Article in Nature biomedical engineering, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Trial
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  4. Article
  5. Plasma Proteomic Signature Predicts Myeloid Neoplasm Risk.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Molecular Insight into Iron Homeostasis of Acute Myeloid Leukemia Blasts.International journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

C W HuDepartment of Bioengineering, Rice University, Houston, TX, USA.
Y QiuDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
A LigeraldeBiophysics Graduate Program, University of California, Berkeley, CA, USA.
A Y RaybonDepartment of Biomedical Engineering, The University of Texas at San Antonio, San Antonio, TX, USA.
S Y YooDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
K R CoombesDepartment of Biomedical Informatics, The Ohio State University, Columbus, OH, USA.
A A QutubDepartment of Bioengineering, Rice University, Houston, TX, USA. amina.qutub@utsa.edu.ORCID http://orcid.org/0000-0003-1737-9208
S M KornblauDepartment of Leukemia, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. skornblau@mdanderson.org.ORCID http://orcid.org/0000-0002-5990-9548

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Spatially-delineated System-level Analyses and Control of Cytoskeletal RegulationR01GM106027 · NIGMS · RICE UNIVERSITY · PI BALAZSI, GABOR, DIEHL, MICHAEL R · 2013 to 2016
$1.2M
NCI NIH HHS P30 CA016672NIGMS NIH HHS R01 GM106027
6 · The paper itself

Abstract

Acute myelogenous leukaemia (AML) is associated with risk factors that are largely unknown and with a heterogeneous response to treatment. Here, we provide a comprehensive quantitative understanding of AML proteomic heterogeneities and hallmarks by using the AML Proteome Atlas, a proteomics database that we have newly derived from MetaGalaxy analyses, for the proteomic profiling of 205 patients with AML and 111 leukaemia cell lines. The analysis of the dataset revealed 154 functional patterns based on common molecular pathways, 11 constellations of correlated functional patterns and 13 signatures that stratify the outcomes of patients. We find limited overlap between proteomics data and both cytogenetics and genetic mutations. Moreover, leukaemia cell lines show limited proteomic similarities with cells from patients with AML, suggesting that a deeper focus on patient-derived samples is needed to gain disease-relevant insights. The AML Proteome Atlas provides a knowledge base for proteomic patterns in AML, a guide to leukaemia cell line selection, and a broadly applicable computational approach for quantifying the heterogeneities of protein expression and proteomic hallmarks in AML.

Indexed as

ProteomicsCell Line, TumorDatabases, FactualHumansLeukemiaLeukemia, Myeloid, AcuteMutationNeoplasm ProteinsPrognosisProportional Hazards ModelsProteomeRegression AnalysisRisk FactorsTranscriptomeNeoplasm ProteinsProteome

Identifiers

PMID30988472
PMCPMC7051028

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.