Evidence map›Paper›PMID 30988468›Full record

ArticleNature methods2019

Unbiased screen of RNA tailing activities reveals a poly(UG) polymerase.

Melanie A Preston, Douglas F Porter, Fan Chen, Natascha Buter, Christopher P Lapointe, Sunduz Keles, Judith Kimble, Marvin Wickens

Abstract read
In one paragraph

Article in Nature methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
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  6. Review
  7. Transposon Regulation in thebioRxiv : the preprint server for biology · 2025
    Article
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  19. A left-handed RNA quadruplex directs gene silencing.Trends in biochemical sciences · 2024
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Melanie A PrestonDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Douglas F PorterDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Fan ChenDepartment of Statistics, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0003-4508-6023
Natascha ButerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Christopher P LapointeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.
Sunduz KelesDepartment of Statistics, University of Wisconsin-Madison, Madison, WI, USA.
Judith KimbleDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA.ORCID http://orcid.org/0000-0001-5622-2073
Marvin WickensDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI, USA. wickens@biochem.wisc.edu.ORCID http://orcid.org/0000-0002-0593-5740
University of Wisconsin–Madison · USHoward Hughes Medical Institute · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Statistical Methods for the Analysis of ChlP-chip DataR01HG003747 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2007 to 2024
$4.8M
Functionally relevant mapping of human GWAS SNPs on model organismsR21HG011371 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI KELES, SUNDUZ · 2020 to 2020
$400k
The Biochemistry and Biology of C. elegans Poly(U) PolymerasesF32GM103130 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PRESTON, MELANIE A. · 2013 to 2013
$54k
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG003747NHGRI NIH HHS R21 HG011371NIGMS NIH HHS F32 GM103130NIGMS NIH HHS R01 GM050942NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

Ribonucleotidyl transferases (rNTases) add untemplated ribonucleotides to diverse RNAs. We have developed TRAID-seq, a screening strategy in Saccharomyces cerevisiae to identify sequences added to a reporter RNA at single-nucleotide resolution by overexpressed candidate enzymes from different organisms. The rNTase activities of 22 previously unexplored enzymes were determined. In addition to poly(A)- and poly(U)-adding enzymes, we identified a cytidine-adding enzyme that is likely to be part of a two-enzyme system that adds CCA to tRNAs in a eukaryote; a nucleotidyl transferase that adds nucleotides to RNA without apparent nucleotide preference; and a poly(UG) polymerase, Caenorhabditis elegans MUT-2, that adds alternating uridine and guanosine nucleotides to form poly(UG) tails. MUT-2 is known to be required for certain forms of RNA silencing, and mutants of the enzyme that result in defective silencing did not add poly(UG) tails in our assay. We propose that MUT-2 poly(UG) polymerase activity is required to promote genome integrity and RNA silencing.

Indexed as

RNA InterferenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsMutationNucleotidyltransferasesRNA NucleotidyltransferasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsCaenorhabditis elegans ProteinsCC adding enzymemut-2 protein, C elegansNucleotidyltransferasespoly G polymerasepoly U polymeraseRNA NucleotidyltransferasesSaccharomyces cerevisiae Proteins

Identifiers

PMID30988468
PMCPMC6613791
OpenAlexW2937096898

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.