Evidence map›Paper›PMID 30988330›Full record

ArticleScientific reports2019

Heritability and genome-wide association study of benign prostatic hyperplasia (BPH) in the eMERGE network.

Jacklyn N Hellwege, Sarah Stallings, Eric S Torstenson, Robert Carroll, Kenneth M Borthwick, Murray H Brilliant, David Crosslin, Adam Gordon, George Hripcsak, Gail P Jarvik and 12 more

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Intrinsic and extrinsic factors causing hyperplasia of the prostate.International journal of urology : official journal of the Japanese Urological Association · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Association of PSA variability with prostate cancer development using large-scale medical information data: a retrospective cohort study.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2023
    Article
  14. [Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2022
    Article
  15. Article
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  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 10 institutions in 1 country.

Jacklyn N HellwegeDivision of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-7479-0920
Sarah StallingsDivision of Geriatric Medicine, Meharry-Vanderbilt Alliance, Nashville, TN, USA.
Eric S TorstensonDivision of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA.
Robert CarrollDepartment of Biomedical Informatics Vanderbilt University, Nashville, TN, USA.
Kenneth M BorthwickHood Center for Health Research, Geisinger Health System, Danville, PA, USA.
Murray H BrilliantCenter for Human Genetics, Marshfield Clinic Research Institute, Marshfield, WI, USA.
David CrosslinDepartment of Biomedical Informatics and Medical Education, School of Medicine, University of Washington, Seattle, WA, USA.
Adam GordonDivision of Medical Genetics, University of Washington, Seattle, WA, USA.
George HripcsakDepartment of Biomedical Informatics, Columbia University, New York, NY, USA.
Gail P JarvikDepartments of Medicine (Medical Genetics) and Genome Sciences, University of Washington, Seattle, WA, USA.
James G LinnemanOffice of Research Computing and Analytics/Marshfield Clinic Research Institute, Marshfield, WI, USA.
Parimala DeviDepartment of Biomedical Informatics and Medical Education, School of Medicine, University of Washington, Seattle, WA, USA.
Peggy L PeissigCenter for Computational and Biomedical Informatics, Marshfield Clinic Research Institute, Marshfield, WI, USA.
Patrick A M SleimanCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Hakon HakonarsonCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Marylyn D RitchieDepartment of Genetics, University of Pennsylvania, Philadelphia, PA, USA.
Shefali Setia VermaDepartment of Genetics, University of Pennsylvania, Philadelphia, PA, USA.
Ning ShangDepartment of Biomedical Informatics, Columbia University, New York, NY, USA.
Josh C DennyDepartment of Biomedical Informatics Vanderbilt University, Nashville, TN, USA.
Dan M RodenDepartment of Biomedical Informatics Vanderbilt University, Nashville, TN, USA.
Digna R Velez EdwardsVanderbilt Genetics Institute, Vanderbilt University Medical Center, Nashville, TN, USA. digna.r.velez.edwards@vumc.org.
Todd L EdwardsDivision of Epidemiology, Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, USA. todd.l.edwards@vumc.org.ORCID http://orcid.org/0000-0003-4318-6119
Vanderbilt University · USMarshfield Clinic · USVanderbilt University Medical Center · USChildren's Hospital of Philadelphia · USUniversity of Pennsylvania · USUniversity of Washington · USUniversity of Washington Medical Center · USColumbia University · USGeisinger Health System · USNewYork–Presbyterian Hospital · US

Funding

University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
The Vanderbilt Institute for Clinical and Translational Research (VICTR)UL1TR000445 · NCATS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BERNARD, GORDON RAPHAEL · 2012 to 2016
$41.4M
Genomic Basis of Susceptibility to COVID-19 Infection and its ComplicationsU01HG006379 · NHGRI · MAYO CLINIC ROCHESTER · PI Richard R. Sharp · 2011 to 2026
$16.5M
Finding Genomic Profiles of COVID-19 Phenotypes from the EHRU01HG008685 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIZABETH W KARLSON, Matthew S Lebo · 2015 to 2026
$13.6M
Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
DNA Sequencing Support for the eMERGE NetworkU01HG008664 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2015 to 2019
$10.9M
Global Alliance for Genomic Health (GA4GH)U01HG008676 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI LENNON, NIALL JOHN, REHM, HEIDI L · 2015 to 2019
$8.6M
The Electronic Medical Records and Genomics (eMERGE) Network Phase III Coordinating Center (U01)U01HG008701 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PETERSON, JOSEPH F. · 2015 to 2019
$7.1M
VGER, the Vanderbilt Genome-Electronic Records ProjectU01HG008672 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DENNY, JOSHUA C., RODEN, DAN M · 2015 to 2019
$5.1M
The Future of Genomics Medicine in Patient Care: Contributions from CHOPU01HG008684 · NHGRI · CHILDREN'S HOSP OF PHILADELPHIA · PI HAKONARSON, HAKON · 2015 to 2019
$5.0M
OMOP information model for eMERGE phenotypingU01HG008679 · NHGRI · GEISINGER CLINIC · PI WILLIAMS, MARC S. · 2015 to 2019
$4.4M
NCATS NIH HHS UL1 TR000445NCATS NIH HHS UL1 TR002373NCI NIH HHS T32 CA160056NCRR NIH HHS S10 RR025141NHGRI NIH HHS U01 HG006379NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008664NHGRI NIH HHS U01 HG008666NHGRI NIH HHS U01 HG008672NHGRI NIH HHS U01 HG008673NHGRI NIH HHS U01 HG008676NHGRI NIH HHS U01 HG008679NHGRI NIH HHS U01 HG008680NHGRI NIH HHS U01 HG008684NHGRI NIH HHS U01 HG008685NHGRI NIH HHS U01 HG008701NIH HHS S10 OD023680
6 · The paper itself

Abstract

Benign prostatic hyperplasia (BPH) results in a significant public health burden due to the morbidity caused by the disease and many of the available remedies. As much as 70% of men over 70 will develop BPH. Few studies have been conducted to discover the genetic determinants of BPH risk. Understanding the biological basis for this condition may provide necessary insight for development of novel pharmaceutical therapies or risk prediction. We have evaluated SNP-based heritability of BPH in two cohorts and conducted a genome-wide association study (GWAS) of BPH risk using 2,656 cases and 7,763 controls identified from the Electronic Medical Records and Genomics (eMERGE) network. SNP-based heritability estimates suggest that roughly 60% of the phenotypic variation in BPH is accounted for by genetic factors. We used logistic regression to model BPH risk as a function of principal components of ancestry, age, and imputed genotype data, with meta-analysis performed using METAL. The top result was on chromosome 22 in SYN3 at rs2710383 (p-value = 4.6 × 10

Indexed as

Genetic Predisposition to DiseaseInheritance PatternsAgedAged, 80 and overBiomarkersCase-Control StudiesElectronic Health RecordsGene Expression ProfilingGenome-Wide Association StudyGenotyping TechniquesHumansMaleMiddle AgedPolymorphism, Single NucleotideProstateProstatic HyperplasiaBiomarkers

Identifiers

PMID30988330
PMCPMC6465359
OpenAlexW2936910275

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.