Evidence map›Paper›PMID 30988315›Full record

ArticleScientific reports2019

Transcriptome Analyses of Heart and Liver Reveal Novel Pathways for Regulating Songbird Migration.

William J Horton, Matthew Jensen, Aswathy Sebastian, Craig A Praul, Istvan Albert, Paul A Bartell

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Avian migration clocks in a changing world.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2024
    Review
  6. Article
  7. Article
  8. Article
  9. Migratory disposition alters lean mass dynamics and protein metabolism in migratory white-throated sparrows (American journal of physiology. Regulatory, integrative and comparative physiology · 2022
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

William J HortonDepartment of Animal Science, Pennsylvania State University, University Park, PA, 16802, USA.
Matthew JensenBioinformatics and Genomics Program, Pennsylvania State University, University Park, PA, 16802, USA.
Aswathy SebastianThe Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, 16802, USA.
Craig A PraulThe Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, 16802, USA.
Istvan AlbertThe Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA, 16802, USA.
Paul A BartellDepartment of Animal Science, Pennsylvania State University, University Park, PA, 16802, USA. pab43@psu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many birds undertake long biannual voyages during the night. During these times of the year birds drastically reduce their amount of sleep, yet curiously perform as well on tests of physical and cognitive performance than during non-migrating times of the year. This inherent physiological protection disappears when birds are forced to stay awake at other times of the year; thus these protective changes are only associated with the nocturnal migratory state. The goal of the current study was to identify the physiological mechanisms that confer protection against the consequences of sleep loss while simultaneously allowing for the increased physical performance required for migration. We performed RNA-seq analyses of heart and liver collected from birds at different times of day under different migratory states and analyzed these data using differential expression, pathway analysis and WGCNA. We identified changes in gene expression networks implicating multiple systems and pathways. These pathways regulate many aspects of metabolism, immune function, wound repair, and protection of multiple organ systems. Consequently, the circannual program controlling the appearance of the migratory phenotype involves the complex regulation of diverse gene networks associated with the physical demands of migration.

Indexed as

Animal MigrationAnimalsCircadian RhythmFlight, AnimalGene Expression RegulationGene Regulatory NetworksImmune System PhenomenaLiverMaleMetabolic Networks and PathwaysMyocardiumPhysical FitnessRNA-SeqSleepSongbirds

Identifiers

PMID30988315
PMCPMC6465361

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.