Evidence map›Paper›PMID 30988260›Full record

ArticleActa crystallographica. Section D, Structural biology2019

Nitrosative stress sensing in Porphyromonas gingivalis: structure of and heme binding by the transcriptional regulator HcpR.

B Ross Belvin, Faik N Musayev, John Burgner, J Neel Scarsdale, Carlos R Escalante, Janina P Lewis

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. cAMP-independent Crp homolog adds to the multi-layer regulatory network inFrontiers in cellular and infection microbiology · 2025
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

B Ross BelvinDepartment of Biochemistry and Molecular Biology, School of Medicine, Virginia Commonwealth University, Richmond, VA 23298, USA.
Faik N MusayevDepartment of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, VA 23298, USA.
John BurgnerThe Philips Institute for Oral Health Research, School of Dentistry, Virginia Commonwealth University, Richmond, VA 23298, USA.
J Neel ScarsdaleDepartment of Biochemistry and Molecular Biology, School of Medicine, Virginia Commonwealth University, Richmond, VA 23298, USA.
Carlos R EscalanteDepartment of Physiology and Biophysics, Virginia Commonwealth University, Richmond, VA 23298, USA.
Janina P LewisDepartment of Biochemistry and Molecular Biology, School of Medicine, Virginia Commonwealth University, Richmond, VA 23298, USA.

Funding

Nitrosative stress defenses in periodontopathogen Porphyromonas gingivalisR01DE023304 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI LEWIS, JANINA P · 2013 to 2025
$3.7M
X-ray Crystallographic Data Collection SystemS10OD021756 · OD · VIRGINIA COMMONWEALTH UNIVERSITY · PI SAFO, MARTIN K · 2017 to 2017
$600k
Biochemical characterization of Porphyromonas gingivalis HcpRF31DE025158 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI BELVIN, BENJAMIN ROSS · 2015 to 2016
$75k
NIDCR NIH HHS 1F31DE025158NIDCR NIH HHS 1R01DE023304NIDCR NIH HHS F31 DE025158NIDCR NIH HHS R01 DE023304NIH HHS S10 OD021756
6 · The paper itself

Abstract

Although the HcpR regulator plays a vital step in initiation of the nitrosative stress response in many Gram-negative anaerobic bacteria, the molecular mechanisms that it uses to mediate gas sensing are not well understood. Here, a 2.6 Å resolution crystal structure of the N-terminal sensing domain of the anaerobic periodontopathogen Porphyromonas gingivalis HcpR is presented. The protein has classical features of the regulators belonging to the FNR-CRP family and contains a hydrophobic pocket in its N-terminal sensing domain. It is shown that heme bound to HcpR exhibits heme iron as a hexacoordinate system in the absence of nitric oxide (NO) and that upon nitrosylation it transitions to a pentacoordinate system. Finally, small-angle X-ray scattering experiments on full-length HcpR reveal that the C-terminal DNA-binding domain of HcpR has a high degree of interdomain flexibility.

Indexed as

Nitrosative StressAmino Acid SequenceAnimalsBacterial ProteinsCatalytic DomainCrystallography, X-RayHemeModels, MolecularMolecular StructureNitric OxidePorphyromonas gingivalisProtein ConformationSequence HomologyBacterial ProteinsHemeNitric OxideanaerobesHcpRheme proteinsmicrobiologynitric oxidenitrosative stressPorphyromonas gingivalistranscriptional regulators

Identifiers

PMID30988260
PMCPMC6465984

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.