Evidence map›Paper›PMID 30988160›Full record

ArticleMolecular and cellular biology2019

Growth Factor Independence 1B-Mediated Transcriptional Repression and Lineage Allocation Require Lysine-Specific Demethylase 1-Dependent Recruitment of the BHC Complex.

David McClellan, Mattie J Casey, Diana Bareyan, Helena Lucente, Christopher Ours, Matthew Velinder, Jason Singer, Mehraju Din Lone, Wenxiang Sun, Yunuen Coria and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Scaling perturbations: beyond genome-scale CRISPR screens.bioRxiv : the preprint server for biology · 2026
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  16. Proximity-dependent labeling methods for proteomic profiling in living cells: An update.Wiley interdisciplinary reviews. Developmental biology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

David McClellanDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Mattie J CaseyDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Diana BareyanDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Helena LucenteDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Christopher OursDepartment of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Matthew VelinderDepartment of Genetics, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Jason SingerDepartment of Genetics, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Mehraju Din LoneDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Wenxiang SunDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Yunuen CoriaDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Clinton C MasonDepartment of Pediatrics, University of Utah School of Medicine, Salt Lake City, Utah, USA.
Michael E EngelDepartment of Oncological Sciences, University of Utah School of Medicine, Salt Lake City, Utah, USA MEE2MJ@hscmail.mcc.virginia.edu.
University of Utah · USPrimary Children's Hospital · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Proteomics CoreU54DK110858 · NIDDK · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Anna E Beaudin, JAMES Eric COX · 2016 to 2026
$8.6M
RESEARCH TRAINING IN HEMATOLOGYT32DK007115 · NIDDK · UNIVERSITY OF UTAH · PI LEIBOLD, ELIZABETH ANN, PRCHAL, JOSEF T · 1986 to 2020
$8.4M
Targeting the GFI1-LSD1 Axis in T-Cell Acute Lymphoblastic LeukemiaR01CA201235 · NCI · UNIVERSITY OF VIRGINIA · PI ENGEL, MICHAEL E · 2017 to 2022
$1.9M
NCI NIH HHS P30 CA042014NCI NIH HHS R01 CA201235NIDDK NIH HHS T32 DK007115NIDDK NIH HHS U54 DK110858
6 · The paper itself

Abstract

Growth factor independence 1B (GFI1B) coordinates assembly of transcriptional repressor complexes comprised of corepressors and histone-modifying enzymes to control gene expression programs governing lineage allocation in hematopoiesis. Enforced expression of GFI1B in K562 erythroleukemia cells favors erythroid over megakaryocytic differentiation, providing a platform to define molecular determinants of binary fate decisions triggered by GFI1B. We deployed proteome-wide proximity labeling to identify factors whose inclusion in GFI1B complexes depends upon GFI1B's obligate effector, lysine-specific demethylase 1 (LSD1). We show that GFI1B preferentially recruits core and putative elements of the BRAF-histone deacetylase (HDAC) (BHC) chromatin-remodeling complex (LSD1, RCOR1, HMG20A, HMG20B, HDAC1, HDAC2, PHF21A, GSE1, ZMYM2, and ZNF217) in an LSD1-dependent manner to control acquisition of erythroid traits by K562 cells. Among these elements, depletion of both HMG20A and HMG20B or of GSE1 blocks GFI1B-mediated erythroid differentiation, phenocopying impaired differentiation brought on by LSD1 depletion or disruption of GFI1B-LSD1 binding. These findings demonstrate the central role of the GFI1B-LSD1 interaction as a determinant of BHC complex recruitment to enable cell fate decisions driven by GFI1B.

Indexed as

AnimalsCell DifferentiationChlorocebus aethiopsCOS CellsDown-RegulationErythroid CellsHistone DeacetylasesHistone DemethylasesHumansK562 CellsPhenotypeProto-Oncogene ProteinsRepressor ProteinsTetradecanoylphorbol AcetateTranscription, GeneticGFI1B protein, humanHistone DeacetylasesHistone DemethylasesKDM1A protein, humanProto-Oncogene ProteinsRepressor ProteinsTetradecanoylphorbol AcetateBHC complexErythropoiesisGFI1BGSE1hematopoiesisHMG20AHMG20BLSD1SNAG domaintranscriptional repression

Identifiers

PMID30988160
PMCPMC6580704
OpenAlexW2949222076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.