Evidence map›Paper›PMID 30987593›Full record

ArticleBMC plant biology2019

Quantitative macromolecular patterns in phytoplankton communities resolved at the taxonomical level by single-cell Synchrotron FTIR-spectroscopy.

Andrea Fanesi, Heiko Wagner, Giovanni Birarda, Lisa Vaccari, Christian Wilhelm

Abstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrea FanesiDepartment of Plant Physiology, Leipzig University, Institute of Biology, Johannisallee 21-23, 04103, Leipzig, Germany.
Heiko WagnerDepartment of Plant Physiology, Leipzig University, Institute of Biology, Johannisallee 21-23, 04103, Leipzig, Germany. hwagner@uni-leipzig.de.ORCID http://orcid.org/0000-0003-2130-9915
Giovanni BirardaElettra - Sincrotrone Trieste, Synchrotron Infrared Source for Spectroscopy and Imaging - SISSI, 34149, Trieste, Basovizza, Italy.
Lisa VaccariElettra - Sincrotrone Trieste, Synchrotron Infrared Source for Spectroscopy and Imaging - SISSI, 34149, Trieste, Basovizza, Italy.
Christian WilhelmDepartment of Plant Physiology, Leipzig University, Institute of Biology, Johannisallee 21-23, 04103, Leipzig, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTechnical limitations regarding bulk analysis of phytoplankton biomass limit our comprehension of carbon fluxes in natural populations and, therefore, of carbon, nutrients and energy cycling in aquatic ecosystems. In this study, we took advantage of Synchrotron FTIR micro-spectroscopy and the partial least square regression (PLSr) algorithm to simultaneously quantify the protein, lipid and carbohydrate content at the single-cell level in a mock phytoplankton community (composed by a cyanobacterium, a green-alga and a diatom) grown at two temperatures (15 °C and 25 °C).

resultsThe PLSr models generated to quantify cell macromolecules presented high quality fit (R

conclusionsThe spectroscopic approach presented in this study allows the quantification of macromolecules in single phytoplankton cells. This method showed that population heterogeneity most likely ensures a backup of non-acclimated cells that may rapidly exploit new favourable niches. This finding may have important consequences for the ecology of phytoplankton populations and shows that the "average cell" concept might substantially limit our comprehension of population dynamics and biogeochemical cycles in aquatic ecosystems.

Indexed as

CarbonDiatomsEcosystemLeast-Squares AnalysisPhytoplanktonPopulation DynamicsSpectroscopy, Fourier Transform InfraredSynchrotronsTemperatureCarbonAlgaeChemometricsFTIR-spectroscopyMacromoleculesPhytoplanktonPLSrSingle cellSynchrotron radiationTemperature

Identifiers

PMID30987593
PMCPMC6466684

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.