Evidence map›Paper›PMID 30987592›Full record

ArticleBMC genomics2019

A cmap-enabled gene expression signature-matching approach identifies small-molecule inducers of accelerated cell senescence.

Ding Wu, Brett Pepowski, Satoe Takahashi, Stephen J Kron

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ding WuDepartment of Molecular Genetics and Cell Biology and Ludwig Center for Metastasis Research, The University of Chicago, 929 East 57th Street, GCIS W522A, Chicago, IL, 60637, USA.
Brett PepowskiDepartment of Molecular Genetics and Cell Biology and Ludwig Center for Metastasis Research, The University of Chicago, 929 East 57th Street, GCIS W522A, Chicago, IL, 60637, USA.
Satoe TakahashiDepartment of Otolaryngology - Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
Stephen J KronDepartment of Molecular Genetics and Cell Biology and Ludwig Center for Metastasis Research, The University of Chicago, 929 East 57th Street, GCIS W522A, Chicago, IL, 60637, USA. skron@uchicago.edu.
University of Chicago · USNorthwestern University · US

Funding

Radiation response within the tumor microenvironmentR01CA164492 · NCI · UNIVERSITY OF CHICAGO · PI KRON, STEPHEN J. · 2011 to 2015
$4.8M
Targets of Reactive Lipid Species regulating DNA damage response and cell senescenceR01CA217182 · NCI · UNIVERSITY OF CHICAGO · PI KRON, STEPHEN J. · 2017 to 2021
$1.7M
PARP Inhibition To Enhance Induction for Head and Neck CancerR01CA176843 · NCI · UNIVERSITY OF CHICAGO · PI KRON, STEPHEN J. · 2013 to 2016
$1.3M
NCI NIH HHS CA164492NCI NIH HHS CA176843NCI NIH HHS R01 CA164492NCI NIH HHS R01 CA176843NCI NIH HHS R01 CA217182
6 · The paper itself

Abstract

backgroundDiverse stresses including genotoxic therapy can induce proliferating cancer cells to undergo cellular senescence and take on the characteristic phenotypes of replicative cellular aging. This accelerated or therapy-induced senescence has been alternatively proposed to contribute to therapeutic efficacy or resistance. Toward better understanding this cell state, we sought to define the core transcriptome of accelerated senescence in cancer cells.

resultsWe examined senescence induced by ionizing irradiation or ectopic overexpression of the stoichiometric cyclin-dependent kinase (CDK) inhibitor p21

conclusionsUsing a systems biology approach with experimental validation, we have defined a core gene expression signature for therapy-induced senescence.

Indexed as

Cellular SenescenceComputational BiologyHumansMCF-7 Cellsp21-Activated KinasesSmall Molecule LibrariesTranscriptomep21-Activated KinasesSmall Molecule LibrariesConnectivity map analysisDifferential expression genesDNA damage focip21-induced senescenceRadiation-induced senescenceSmall molecule inhibitorsTranscriptome analysisUpstream regulator factors

Identifiers

PMID30987592
PMCPMC6466706
OpenAlexW2944802991

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.