Evidence map›Paper›PMID 30987196›Full record

ArticleViruses2019

Combining a Simple Method for DNA/RNA/Protein Co-Purification and Arabidopsis Protoplast Assay to Facilitate Viroid Research.

Jian Jiang, Junfei Ma, Bin Liu, Ying Wang

Abstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Cellular roadmaps of viroid infection.Trends in microbiology · 2023
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jian JiangDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. jiang@biology.msstate.edu.
Junfei MaDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. jm5026@msstate.edu.
Bin LiuDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. binliu@biology.msstate.edu.
Ying WangDepartment of Biological Sciences, Mississippi State University, Starkville, MS 39762, USA. wang@biology.msstate.edu.ORCID 0000-0002-9659-977X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant-viroid interactions represent a valuable model for delineating structure-function relationships of noncoding RNAs. For various functional studies, it is desirable to minimize sample variations by using DNA, RNA, and proteins co-purified from the same samples. Currently, most of the co-purification protocols rely on TRI Reagent (Trizol as a common representative) and require protein precipitation and dissolving steps, which render difficulties in experimental handling and high-throughput analyses. Here, we established a simple and robust method to minimize the precipitation steps and yield ready-to-use RNA and protein in solutions. This method can be applied to samples in small quantities, such as protoplasts. Given the ease and the robustness of this new method, it will have broad applications in virology and other disciplines in molecular biology.

Indexed as

ArabidopsisArabidopsis ProteinsDNA, PlantGenome, PlantHost-Pathogen InteractionsMolecular BiologyProtoplastsRNA, PlantRNA, ViralViroidsVirus ReplicationArabidopsis ProteinsDNA, PlantRNA, PlantRNA, ViralDNA/RNA/protein co-purificationprotoplastviroid

Identifiers

PMID30987196
PMCPMC6521142

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.