Evidence map›Paper›PMID 30982596›Full record

ArticleCell2019

Volumetric Ca

Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy and 1 more

Abstract read
In one paragraph

Article in Cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Out-of-focus signal rejection forBiomedical optics express · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Modulation of CaScientific reports · 2024
    Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Siegfried WeisenburgerLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA.
Frank TejeraLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA.
Jeffrey DemasLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA.
Brandon ChenLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA.
Jason ManleyLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA.
Fraser T SparksDepartment of Neuroscience, Columbia University, New York, NY, USA; Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
Francisca Martínez TraubLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA.
Tanya DaigleAllen Institute for Brain Science, Seattle, WA, USA.
Hongkui ZengAllen Institute for Brain Science, Seattle, WA, USA.
Attila LosonczyDepartment of Neuroscience, Columbia University, New York, NY, USA; The Kavli Institute for Brain Science, Columbia University, New York, NY, USA; Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
Alipasha VaziriLaboratory of Neurotechnology and Biophysics, The Rockefeller University, New York, NY, USA; Research Institute of Molecular Pathology, Vienna, Austria; The Kavli Neural Systems Institute, The Rockefeller University, New York, NY, USA. Electronic address: vaziri@rockefeller.edu.

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI NGAI, JOHN J. · 2017 to 2021
$64.7M
Towards a Complete Description of the Circuitry Underlying Sharp Wave-Mediated Memory ReplayU19NS104590 · NINDS · STANFORD UNIVERSITY · PI LISMAN, JOHN E · 2017 to 2021
$13.2M
Cortex-wide volumetric imaging of neuronal activity.U01NS103488 · NINDS · ROCKEFELLER UNIVERSITY · PI VAZIRI, ALIPASHA · 2017 to 2019
$2.7M
Closed-loop intervention in epilepsy.R01NS094668 · NINDS · STANFORD UNIVERSITY · PI LOSONCZY, ATTILA, SOLTESZ, IVAN · 2015 to 2019
$2.3M
High-speed volumetric imaging of neuronal network activity at depth using Multiplexed Scanned Temporal Focusing (MuST)U01NS094263 · NINDS · ROCKEFELLER UNIVERSITY · PI VAZIRI, ALIPASHA · 2015 to 2017
$2.2M
A transgenic platform to produce genetic tools for monitoring & manipulating plasR01DA028298 · NIDA · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2009 to 2013
$2.2M
Hippocampal inhibitory control of contextual fear learningR01MH100631 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LOSONCZY, ATTILA · 2014 to 2018
$2.0M
NIDA NIH HHS R01 DA028298NIMH NIH HHS R01 MH100631NIMH NIH HHS U19 MH114830NINDS NIH HHS R01 NS094668NINDS NIH HHS U01 NS094263NINDS NIH HHS U01 NS103488NINDS NIH HHS U19 NS104590
6 · The paper itself

Abstract

Calcium imaging using two-photon scanning microscopy has become an essential tool in neuroscience. However, in its typical implementation, the tradeoffs between fields of view, acquisition speeds, and depth restrictions in scattering brain tissue pose severe limitations. Here, using an integrated systems-wide optimization approach combined with multiple technical innovations, we introduce a new design paradigm for optical microscopy based on maximizing biological information while maintaining the fidelity of obtained neuron signals. Our modular design utilizes hybrid multi-photon acquisition and allows volumetric recording of neuroactivity at single-cell resolution within up to 1 × 1 × 1.22 mm volumes at up to 17 Hz in awake behaving mice. We establish the capabilities and potential of the different configurations of our imaging system at depth and across brain regions by applying it to in vivo recording of up to 12,000 neurons in mouse auditory cortex, posterior parietal cortex, and hippocampus.

Indexed as

AnimalsBrainCalciumFemaleHippocampusMaleMiceMice, Inbred C57BLMicroscopyMolecular ImagingNeuroimagingNeuronsSingle-Cell AnalysisCalcium2-photon3-photonCa(2+) imagingcircuit dynamicscortical networkhigh-speedlight sculptingmicroscopysystems neurosciencevolumetric

Identifiers

PMID30982596
PMCPMC6602798

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.