Evidence map›Paper›PMID 30982471›Full record

ArticleGenome biology2019

Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency.

Laura-Jayne Gardiner, Luzie U Wingen, Paul Bailey, Ryan Joynson, Thomas Brabbs, Jonathan Wright, James D Higgins, Neil Hall, Simon Griffiths, Bernardo J Clavijo and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
35.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
  2. Breeding better crops: lessons from the homologous recombination pathway.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Review
  3. Article
  4. Review
  5. Chlorophyll deficient 5 encodes a DNA helicase and is essential for chloroplast development in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Molecular mechanisms and regulation of recombination frequency and distribution in plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
  11. Article
  12. The Control of the Crossover Localization in Allium.International journal of molecular sciences · 2023
    Article
  13. Exploring impact of recombination landscapes on breeding outcomes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Review
  14. Identification of structural variations related to drought tolerance in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Laura-Jayne GardinerEarlham Institute, Norwich, NR4 7UZ, UK. Laura-Jayne.Gardiner@ibm.com.
Luzie U WingenJohn Innes Centre, Norwich, NR4 7UH, UK.
Paul BaileyEarlham Institute, Norwich, NR4 7UZ, UK.
Ryan JoynsonEarlham Institute, Norwich, NR4 7UZ, UK.
Thomas BrabbsEarlham Institute, Norwich, NR4 7UZ, UK.
Jonathan WrightEarlham Institute, Norwich, NR4 7UZ, UK.
James D HigginsDepartment of Genetics and Genome Biology, University of Leicester, Leicester, LE1 7RH, UK.
Neil HallEarlham Institute, Norwich, NR4 7UZ, UK.
Simon GriffithsJohn Innes Centre, Norwich, NR4 7UH, UK.
Bernardo J ClavijoEarlham Institute, Norwich, NR4 7UZ, UK.
Anthony HallEarlham Institute, Norwich, NR4 7UZ, UK. Anthony.Hall@earlham.ac.uk.ORCID 0000-0002-1806-020X
Earlham Institute · GBJohn Innes Centre · GBUniversity of East Anglia · GBUniversity of Leicester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J003557/1Biotechnology and Biological Sciences Research Council BB/N002628/1Biotechnology and Biological Sciences Research Council BB/N005104/1Biotechnology and Biological Sciences Research Council BB/N005155/1Biotechnology and Biological Sciences Research Council BB/N020871/1Biotechnology and Biological Sciences Research Council BB/P016855/1
6 · The paper itself

Abstract

backgroundSequence exchange between homologous chromosomes through crossing over and gene conversion is highly conserved among eukaryotes, contributing to genome stability and genetic diversity. A lack of recombination limits breeding efforts in crops; therefore, increasing recombination rates can reduce linkage drag and generate new genetic combinations.

resultsWe use computational analysis of 13 recombinant inbred mapping populations to assess crossover and gene conversion frequency in the hexaploid genome of wheat (Triticum aestivum). We observe that high-frequency crossover sites are shared between populations and that closely related parents lead to populations with more similar crossover patterns. We demonstrate that gene conversion is more prevalent and covers more of the genome in wheat than in other plants, making it a critical process in the generation of new haplotypes, particularly in centromeric regions where crossovers are rare. We identify quantitative trait loci for altered gene conversion and crossover frequency and confirm functionality for a novel RecQ helicase gene that belongs to an ancient clade that is missing in some plant lineages including Arabidopsis.

conclusionsThis is the first gene to be demonstrated to be involved in gene conversion in wheat. Harnessing the RecQ helicase has the potential to break linkage drag utilizing widespread gene conversions.

Indexed as

Crossing Over, GeneticGene ConversionGenome, PlantPolyploidyTriticumWhole Genome SequencingCrossoverGene conversionQTLRecombinationWheat

Identifiers

PMID30982471
PMCPMC6463664
OpenAlexW2912071051

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.