Evidence map›Paper›PMID 30982214›Full record

ArticleMolecular biology reports2019

In silico screening of sugar alcohol compounds to inhibit viral matrix protein VP40 of Ebola virus.

Nagasundaram Nagarajan, Edward K Y Yapp, Nguyen Quoc Khanh Le, Hui-Yuan Yeh

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Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Nagasundaram NagarajanSchool of Humanities, Nanyang Technological University, 14 Nanyang Dr, Singapore, 637332, Singapore. nnagarajan@ntu.edu.sg.ORCID http://orcid.org/0000-0002-9581-4781
Edward K Y YappSingapore Institute of Manufacturing Technology, 2 Fusionopolis Way, Singapore, 138634, Singapore.
Nguyen Quoc Khanh LeSchool of Humanities, Nanyang Technological University, 14 Nanyang Dr, Singapore, 637332, Singapore.
Hui-Yuan YehSchool of Humanities, Nanyang Technological University, 14 Nanyang Dr, Singapore, 637332, Singapore. hyyeh@ntu.edu.sg.
Nanyang Technological University · SGSingapore Institute of Manufacturing Technology · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ebola virus is a virulent pathogen that causes highly lethal hemorrhagic fever in human and non-human species. The rapid growth of this virus infection has made the scenario increasingly complicated to control the disease. Receptor viral matrix protein (VP40) is highly responsible for the replication and budding of progeny virus. The binding of RNA to VP40 could be the crucial factor for the successful lifecycle of the Ebola virus. In this study, we aimed to identify the potential drug that could inhibit VP40. Sugar alcohols were enrich with antiviral properties used to inhibit VP40. Virtual screening analysis was perform for the 48 sugar alcohol compounds, of which the following three compounds show the best binding affinity: Sorbitol, Mannitol and Galactitol. To understand the perfect binding orientation and the strength of non-bonded interactions, individual molecular docking studies were perform for the best hits. Further molecular dynamics studies were conduct to analyze the efficacy between the protein-ligand complexes and it was identify that Sorbitol obtains the highest efficacy. The best-screened compounds obtained drug-like property and were less toxic, which could be use as a potential lead compound to develop anti-Ebola drugs.

Indexed as

Antiviral AgentsComputer SimulationEbolavirusGalactitolHEK293 CellsHemorrhagic Fever, EbolaHumansLigandsMannitolMolecular Docking SimulationMolecular Dynamics SimulationProtein BindingSorbitolSugar AlcoholsViral Matrix ProteinsAntiviral AgentsGalactitolLigandsMannitolSorbitolSugar AlcoholsViral Matrix ProteinsVP40 protein, virusEbolaMolecular dockingMolecular dynamics simulationsSugar alcoholsVP40

Identifiers

PMID30982214
OpenAlexW2936391283

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.