Evidence map›Paper›PMID 30982135›Full record

ArticleHuman genetics2019

Variants in KIAA0825 underlie autosomal recessive postaxial polydactyly.

Irfan Ullah, Naseebullah Kakar, Isabelle Schrauwen, Shabir Hussain, Imen Chakchouk, Khurram Liaqat, Anushree Acharya, Naveed Wasif, Regie Lyn P Santos-Cortez, Saadullah Khan and 15 more

Abstract read
In one paragraph

Article in Human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. The molecular genetics of human appendicular skeleton.Molecular genetics and genomics : MGG · 2022
    Pooled it
  2. Article
  3. NovelGenes · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Variants in EFCAB7 underlie nonsyndromic postaxial polydactyly.European journal of human genetics : EJHG · 2023
    Article
  8. Identification ofGenes · 2023
    Article
  9. Genetics of congenital anomalies of the hand.World journal of orthopedics · 2022
    Article
  10. Article
  11. A Frameshift Variant inMolecular syndromology · 2021
    Article
  12. Article
  13. Article
  14. Deleterious Variants inInternational journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 3 countries.

Irfan Ullah *Department of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Naseebullah Kakar *Institute of Human Genetics, University of Ulm, Ulm, Germany.
Isabelle Schrauwen *Department of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA.
Shabir Hussain *Department of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Imen ChakchoukDepartment of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA.
Khurram LiaqatDepartment of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA.
Anushree AcharyaDepartment of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA.
Naveed WasifInstitute of Human Genetics, University of Ulm, Ulm, Germany.
Regie Lyn P Santos-CortezDepartment of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA.
Saadullah KhanDepartment of Biotechnology and Genetic Engineering, Kohat University of Science and Technology, Kohat, Pakistan.
Abdul AzizDepartment of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Kwanghyuk LeeDepartment of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA.
Julien CouthouisDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Denise HornInstitute for Medical Genetics and Human Genetics, Charité Universitätsmedizin Berlin, Berlin, Germany.
Bjørt K KragesteenInstitute for Medical Genetics and Human Genetics, Charité Universitätsmedizin Berlin, Berlin, Germany.
Malte SpielmannInstitute for Medical Genetics and Human Genetics, Charité Universitätsmedizin Berlin, Berlin, Germany.
Holger ThieleCologne Center for Genomics (CCG), Universitat zu Koln, Cologne, Germany.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, USA.
Michael J BamshadDepartment of Genome Sciences, University of Washington, Seattle, USA.
Aaron D GitlerDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Jamil AhmadDepartment of Biotechnology, Balochistan University of Information Technology, Engineering, and Management Sciences, Quetta, Pakistan.
Muhammad AnsarDepartment of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Guntram BorckInstitute of Human Genetics, University of Ulm, Ulm, Germany.
Wasim AhmadDepartment of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Suzanne M LealDepartment of Molecular and Human Genetics, Center for Statistical Genetics, Baylor College of Medicine, 1 Baylor Plaza 700D, Houston, TX, 77030, USA. sleal@bcm.edu.ORCID http://orcid.org/0000-0003-1231-8174
Baylor College of Medicine · USQuaid-i-Azam University · PKCharité - Universitätsmedizin Berlin · DEBalochistan University of Information Technology, Engineering and Management Sciences · PKStanford University · USUniversity of Washington · USKohat University of Science and Technology · PKUniversität Ulm · DEUniversity of Cologne · DEUniversity of Lahore · PK

Funding

UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG006493
6 · The paper itself

Abstract

Postaxial polydactyly (PAP) is a common limb malformation that often leads to cosmetic and functional complications. Molecular evaluation of polydactyly can serve as a tool to elucidate genetic and signaling pathways that regulate limb development, specifically, the anterior-posterior specification of the limb. To date, only five genes have been identified for nonsyndromic PAP: FAM92A, GLI1, GLI3, IQCE and ZNF141. In this study, two Pakistani multiplex consanguineous families with autosomal recessive nonsyndromic PAP were clinically and molecularly evaluated. From both pedigrees, a DNA sample from an affected member underwent exome sequencing. In each family, we identified a segregating frameshift (c.591dupA [p.(Q198Tfs*21)]) and nonsense variant (c.2173A > T [p.(K725*)]) in KIAA0825 (also known as C5orf36). Although KIAA0825 encodes a protein of unknown function, it has been demonstrated that its murine ortholog is expressed during limb development. Our data contribute to the establishment of a catalog of genes important in limb patterning, which can aid in diagnosis and obtaining a better understanding of the biology of polydactyly.

Indexed as

MutationAnimalsConsanguinityExome SequencingFamily HealthFemaleFingersGenes, RecessiveGenetic Predisposition to DiseaseGenotypeHumansIntracellular Signaling Peptides and ProteinsMaleMice, Inbred C57BLPedigreePhenotypeIntracellular Signaling Peptides and ProteinsKIAA0825 protein, human

Identifiers

PMID30982135
PMCPMC6724712
OpenAlexW2938186711

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.