Evidence map›Paper›PMID 30980216›Full record

ArticleJournal of plant research2019

Absorbance spectra of the hematochrome-like granules and eyespot of Euglena gracilis by scan-free absorbance spectral imaging A(x, y, λ) within the live cells.

Kyohei Yamashita, Takafumi Yagi, Takumi Isono, Yusuke Nishiyama, Masafumi Hashimoto, Koji Yamada, Kengo Suzuki, Eiji Tokunaga

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Article in Journal of plant research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 59% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Reddening of the Unicellular Green AlgaPlants (Basel, Switzerland) · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kyohei YamashitaDepartment of Physics, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo, Japan.
Takafumi YagiDepartment of Physics, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo, Japan.
Takumi IsonoDepartment of Physics, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo, Japan.
Yusuke NishiyamaDepartment of Physics, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo, Japan.
Masafumi HashimotoDepartment of Physics, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo, Japan.
Koji Yamadaeuglena Co., Ltd., Yokohama-shi, Kanagawa, Japan.
Kengo Suzukieuglena Co., Ltd., Yokohama-shi, Kanagawa, Japan.
Eiji TokunagaDepartment of Physics, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo, Japan. eiji@rs.kagu.tus.ac.jp.ORCID http://orcid.org/0000-0001-8614-8898
Tokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Euglena gracilis has an organelle resembling hematochrome, with an appearance similar to the eyespot and the absorption band spectrally overlapped with that of the carotenoid. To discriminate the hematochrome-like granules and eyespot, scan-free, non-invasive, absorbance spectral imaging A(x, y, λ) microscopy of single live cells, where A(x, y, λ) means absorbance at a position (x, y) on a two-dimensional image at a specific wavelength λ was applied. This technique was demonstrated to be a powerful tool for basic research on intracellular structural analysis. By this method, characteristic absorption spectra specific to the hematochrome-like granule or eyespot were identified among a variety of spectra observed depending on the location inside the organelles. The hematochrome-like granule was dark orange and deep green in its outline and had a characteristic absorption peak at 620 nm as well as at 676 to 698 nm, suggesting that its origin is a component of chloroplast including chlorophyll a. Furthermore, the representative spectra of these organelles were derived by principal component analysis of the absorbance and its position in absorbance image, indicating that they can be distinguished from each other and other regions. It was also confirmed that even in areas where these organelles and chloroplasts overlap, one can distinguish them from each other. The present research clarified the absorption spectra of the eyespot with 1 × 1 µm spatial resolution and those unpublished of hematochrome-like granules of E. gracilis, and indicated that one can statistically distinguish these organelles by this method.

Indexed as

AnimalsEuglena gracilisIntravital MicroscopyMicrospectrophotometryOrganellesPhotoreceptor CellsAbsorbance spectral imagingAlgaCarotenoidChloroplastEuglenaEyespotHematochrome-like granuleMicroscopyPhotosynthesisPrincipal component analysis

Identifiers

PMID30980216
OpenAlexW2939828041

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.