Evidence map›Paper›PMID 30979882›Full record

ArticleNature communications2019

Diel population and functional synchrony of microbial communities on coral reefs.

Linda Wegley Kelly, Craig E Nelson, Andreas F Haas, Douglas S Naliboff, Sandi Calhoun, Craig A Carlson, Robert A Edwards, Michael D Fox, Mark Hatay, Maggie D Johnson and 10 more

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Genomic study and lipidomic bioassay ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Linda Wegley KellyDepartment of Biology, San Diego State University, San Diego, 92182, USA. lwegley@gmail.com.ORCID http://orcid.org/0000-0002-9157-4426
Craig E NelsonDepartment of Oceanography and Sea Grant College Program, Center for Microbial Oceanography: Research and Education, University of Hawai'i at Mānoa, Honolulu, 96822, USA.ORCID http://orcid.org/0000-0003-2525-3496
Andreas F HaasDepartment of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research and Utrecht University, Texel, The Netherlands.
Douglas S NaliboffDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Sandi CalhounDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Craig A CarlsonDepartment of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, 93106, USA.
Robert A EdwardsDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Michael D FoxScripps Institution of Oceanography, University of California, San Diego, 92093, USA.ORCID http://orcid.org/0000-0002-5004-1025
Mark HatayDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Maggie D JohnsonScripps Institution of Oceanography, University of California, San Diego, 92093, USA.
Emily L A KellyScripps Institution of Oceanography, University of California, San Diego, 92093, USA.
Yan Wei LimDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Saichetana MacherlaDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Zachary A QuinlanDepartment of Oceanography and Sea Grant College Program, Center for Microbial Oceanography: Research and Education, University of Hawai'i at Mānoa, Honolulu, 96822, USA.ORCID http://orcid.org/0000-0002-0351-8927
Genivaldo Gueiros Z SilvaDepartment of Biology, San Diego State University, San Diego, 92182, USA.
Mark J A VermeijCaribbean Marine Biological Institute (CARMABI), Willemstad, Curaçao.
Brian ZgliczynskiScripps Institution of Oceanography, University of California, San Diego, 92093, USA.
Stuart A SandinScripps Institution of Oceanography, University of California, San Diego, 92093, USA.
Jennifer E SmithScripps Institution of Oceanography, University of California, San Diego, 92093, USA.
Forest RohwerDepartment of Biology, San Diego State University, San Diego, 92182, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

On coral reefs, microorganisms are essential for recycling nutrients to primary producers through the remineralization of benthic-derived organic matter. Diel investigations of reef processes are required to holistically understand the functional roles of microbial players in these ecosystems. Here we report a metagenomic analysis characterizing microbial communities in the water column overlying 16 remote forereef sites over a diel cycle. Our results show that microbial community composition is more dissimilar between day and night samples collected from the same site than between day or night samples collected across geographically distant reefs. Diel community differentiation is largely driven by the flux of Psychrobacter sp., which is two-orders of magnitude more abundant during the day. Nighttime communities are enriched with species of Roseobacter, Halomonas, and Alteromonas encoding a greater variety of pathways for carbohydrate catabolism, further illustrating temporal patterns of energetic provisioning between different marine microbes. Dynamic diel fluctuations of microbial populations could also support the efficient trophic transfer of energy posited in coral reef food webs.

Indexed as

Coral ReefsMicrobiotaPhotoperiodAlteromonasEcosystemEnvironmental MonitoringHalomonasOrganic ChemicalsPacific OceanPsychrobacterRNA, RibosomalRoseobacterOrganic ChemicalsRNA, Ribosomal

Identifiers

PMID30979882
PMCPMC6461649

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.