Evidence map›Paper›PMID 30978975›Full record

ArticleInternational journal of molecular sciences2019

Hydrodynamic Behavior of the Intrinsically Disordered Potyvirus Protein VPg, of the Translation Initiation Factor eIF4E and of their Binary Complex.

Jocelyne Walter, Amandine Barra, Bénédicte Doublet, Nicolas Céré, Justine Charon, Thierry Michon

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Macromolecular Interactions of Disordered Proteins.International journal of molecular sciences · 2020
    Article
  6. Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jocelyne WalterUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, CS 20032, 33140 Villenave d'Ornon, France. Jocelyne.walter@inra.fr.
Amandine BarraUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, CS 20032, 33140 Villenave d'Ornon, France. amandine.barra@inra.fr.
Bénédicte DoubletUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, CS 20032, 33140 Villenave d'Ornon, France. benedicte.doublet@inra.fr.
Nicolas CéréUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, CS 20032, 33140 Villenave d'Ornon, France. nicolas.cere@hotmail.fr.
Justine CharonUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, CS 20032, 33140 Villenave d'Ornon, France. justine.charon@sydney.edu.au.
Thierry MichonUMR 1332 Biologie du Fruit et Pathologie, INRA, Université de Bordeaux, CS 20032, 33140 Villenave d'Ornon, France. thierry.michon@inra.fr.ORCID 0000-0002-0041-9376
Université de Bordeaux · FRThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein intrinsic disorder is involved in many biological processes and good experimental models are valuable to investigate its functions. The potyvirus genome-linked protein, VPg, displays many features of an intrinsically disordered protein. The virus cycle requires the formation of a complex between VPg and eIF4E, one of the host translation initiation factors. An in-depth characterization of the hydrodynamic properties of VPg, eIF4E, and of their binary complex VPg-eIF4E was carried out. Two complementary experimental approaches, size-exclusion chromatography and fluorescence anisotropy, which is more resolving and revealed especially suitable when protein concentration is the limiting factor, allowed to estimate monomers compaction upon complex formation. VPg possesses a high degree of hydration which is in agreement with its classification as a partially folded protein in between a molten and pre-molten globule. The natively disordered first 46 amino acids of eIF4E contribute to modulate the protein hydrodynamic properties. The addition of an N-ter His tag decreased the conformational entropy of this intrinsically disordered region. A comparative study between the two tagged and untagged proteins revealed the His tag contribution to proteins hydrodynamic behavior.

Indexed as

Chromatography, GelEukaryotic Initiation Factor-4EHost-Pathogen InteractionsHydrodynamicsIntrinsically Disordered ProteinsLactucaPlant DiseasesPlant ProteinsPotyvirusViral ProteinsEukaryotic Initiation Factor-4EIntrinsically Disordered ProteinsPlant ProteinsViral ProteinseIF4Efluorescence anisotropyintrinsically disordered proteinmolten globuleplant viruspotyvirusprotein hydrodynamicsprotein-protein interactionVPg

Identifiers

PMID30978975
PMCPMC6479716
OpenAlexW2936744207

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.