Evidence map›Paper›PMID 30978223›Full record

ArticlePloS one2019

Characterization of MenA (isoprenyl diphosphate:1,4-dihydroxy-2-naphthoate isoprenyltransferase) from Mycobacterium tuberculosis.

Rakesh K Dhiman, Venugopal Pujari, James M Kincaid, Melanie A Ikeh, Tanya Parish, Dean C Crick

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 24 citations in OpenAlex.

  1. Increasing Vitamin KJournal of agricultural and food chemistry · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Self-control of vitamin KThe Journal of biological chemistry · 2020
    Article
  7. Allosteric regulation of menaquinone (vitamin KThe Journal of biological chemistry · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Rakesh K DhimanDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, United States of America.
Venugopal PujariDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, United States of America.
James M KincaidDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, United States of America.
Melanie A IkehQueen Mary University of London, Barts & The London School of Medicine and Dentistry, London, United Kingdom.
Tanya ParishQueen Mary University of London, Barts & The London School of Medicine and Dentistry, London, United Kingdom.
Dean C CrickDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, CO, United States of America.ORCID 0000-0001-9281-7058
Colorado State University · USInfectious Disease Research Institute · USQueen Mary University of London · GB

Funding

Sterol/Hopanoid Biosynthesis: An Anti-TB Drug TargetR01AI049151 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI CRICK, DEAN C · 2001 to 2019
$4.1M
Menaquinone biosynthesis: a drug target in Gram-positive bacteriaR56AI049151 · NIAID · COLORADO STATE UNIVERSITY · PI CRICK, DEAN C · 2007 to 2007
$320k
NIAID NIH HHS R01 AI049151NIAID NIH HHS R56 AI049151
6 · The paper itself

Abstract

The menaquinone biosynthetic pathway presents a promising drug target against Mycobacterium tuberculosis and potentially other Gram-positive pathogens. In the present study, the essentiality, steady state kinetics of MenA from M. tuberculosis and the mechanism of MenA inhibition by Ro 48-8071 were characterized. MenA [isoprenyl diphosphate:1,4-dihydroxy-2-naphthoate (DHNA) isoprenyltransferase] catalyzes a critical reaction in menaquinone biosynthesis that involves the conversion of cytosolic DHNA, to membrane bound demethylmenaquinone by transferring a hydrophobic 45-carbon isoprenoid chain (in the case of mycobacteria) to the ring nucleus of DHNA. Rv0534c previously identified as the gene encoding MenA in M. tuberculosis complemented a menA deletion in E. coli and an E. coli host expressing Rv0534c exhibited an eight-fold increase in MenA specific activity over the control strain harboring empty vector under similar assay conditions. Expression of Rv0534c is essential for mycobacterial survival and the native enzyme from M. tuberculosis H37Rv was characterized using membrane preparations as it was not possible to solubilize and purify the recombinant enzyme. The enzyme is absolutely dependent on the presence of a divalent cation for optimal activity with Mg+2 being the most effective and is active over a wide pH range, with pH 8.5 being optimal. The apparent Km values for DHNA and farnesyl diphosphate were found to be 8.2 and 4.3 μM, respectively. Ro 48-8071, a compound previously reported to inhibit mycobacterial MenA activity, is non-competitive with regard to DHNA and competitive with regard to the isoprenyldiphosphate substrate.

Indexed as

Microbial ViabilityAlkyl and Aryl TransferasesBacterial ProteinsEscherichia coliGene DeletionGenetic Complementation TestMycobacterium tuberculosisNaphtholsSubstrate Specificity1,4-dihydroxy-2-naphthoate prenyltransferase, Mycobacterium tuberculosis1,4-dihydroxy-2-naphthoic acidAlkyl and Aryl TransferasesBacterial ProteinsNaphthols

Identifiers

PMID30978223
PMCPMC6461227
OpenAlexW2937069679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.