Evidence map›Paper›PMID 30978148›Full record

ArticlePhysiological genomics2019

Identification of suitable reference microRNA for qPCR analysis in pediatric inflammatory bowel disease.

Christie Buonpane, Guillermo Ares, Beshoy Benyamen, Carrie Yuan, Catherine J Hunter

Open access · bronzeAbstract read
In one paragraph

Article in Physiological genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Immune and microRNA responses toWorld journal of gastroenterology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Christie BuonpaneDepartment of Pediatrics, Feinberg School of Medicine, Northwestern University , Chicago, Illinois.
Guillermo AresAnn and Robert H. Lurie Children's Hospital of Chicago , Chicago, Illinois.
Beshoy BenyamenDepartment of Pediatrics, Feinberg School of Medicine, Northwestern University , Chicago, Illinois.
Carrie YuanDepartment of Pediatrics, Feinberg School of Medicine, Northwestern University , Chicago, Illinois.
Catherine J HunterDepartment of Pediatrics, Feinberg School of Medicine, Northwestern University , Chicago, Illinois.ORCID 0000-0002-5563-3652
Northwestern University · USLurie Children's Hospital · US

Funding

Defining bacterial virulence, cAMP and PKA in necrotizing enterocolitisK08DK106450 · NIDDK · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI HUNTER, CATHERINE JANE · 2015 to 2021
$851k
RHO-ASSOCIATED KINASE-DEPENDENT CYTOSKELETAL AND TIGHTJUNCTION DYSREGULATION IN NECROTIZING ENTEROCOLITISR03DK117216 · NIDDK · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI HUNTER, CATHERINE JANE · 2019 to 2020
$151k
NIDDK NIH HHS K08 DK106450NIDDK NIH HHS R03 DK117216
6 · The paper itself

Abstract

Pediatric inflammatory bowel disease (IBD) accounts for 10-15% of IBD and is associated with considerable morbidity for patients. Dysregulated microRNAs (miRNA, miR), small noncoding RNA molecules that modulate gene expression, have been the target of research in IBD diagnosis, surveillance, and therapy. Proper selection of reference genes, which are a prerequisite for accurate measurement of miRNA expression, is currently lacking. We hypothesize that appropriate normalization requires unique reference genes for different tissue and disease types. Through the study of 28 pediatric intestinal samples, we sought to create a protocol for selection of suitable endogenous reference genes. Candidate reference genes (miR-16, 193a, 27a, 103a, 191) were analyzed by RT-quantitative (q)PCR. Criteria used for designation of suitable reference genes were as follows:

Indexed as

ChildChild, PreschoolFemaleGene Expression ProfilingHumansInflammatory Bowel DiseasesMaleMicroRNAsReal-Time Polymerase Chain ReactionMicroRNAsCrohn’s diseaseinflammatory bowel diseasemicroRNAreference geneulcerative colitis

Identifiers

PMID30978148
PMCPMC6589555
OpenAlexW2936987438

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.