Evidence map›Paper›PMID 30977292›Full record

ArticleProteomics2019

Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets.

Anne D Rocheleau, Alexander R Melrose, Jennifer M Cunliffe, John Klimek, Özgün Babur, Samuel Tassi Yunga, Anh T P Ngo, Jiaqing Pang, Larry L David, Owen J T McCarty and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proteomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Comparison of MSAnalytical and bioanalytical chemistry · 2021
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Anne D RocheleauDepartment of Biomedical Engineering, Oregon Health & Science University, 97239, Portland, OR, USA.
Alexander R MelroseKnight Cardiovascular Institute, Oregon Health & Science University, 97239, Portland, OR, USA.
Jennifer M CunliffeProteomics Shared Resource, Oregon Health & Science University, 97239, Portland, OR, USA.
John KlimekProteomics Shared Resource, Oregon Health & Science University, 97239, Portland, OR, USA.
Özgün BaburDepartment of Molecular and Medical Genetics, Oregon Health & Science University, 97239, Portland, OR, USA.
Samuel Tassi YungaDepartment of Biomedical Engineering, Oregon Health & Science University, 97239, Portland, OR, USA.
Anh T P NgoDepartment of Biomedical Engineering, Oregon Health & Science University, 97239, Portland, OR, USA.
Jiaqing PangDepartment of Biomedical Engineering, Oregon Health & Science University, 97239, Portland, OR, USA.
Larry L DavidProteomics Shared Resource, Oregon Health & Science University, 97239, Portland, OR, USA.
Owen J T McCartyDepartment of Biomedical Engineering, Oregon Health & Science University, 97239, Portland, OR, USA.
Joseph E AslanDepartment of Biomedical Engineering, Oregon Health & Science University, 97239, Portland, OR, USA.ORCID 0000-0002-8873-0387
Oregon Health & Science University · US

Funding

Characterization of Coagulation Factor-platelet Interactions: Role of FXIR01HL101972 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Owen J McCarty · 2010 to 2026
$8.5M
Pathway Maps of Platelet Phenotype and FunctionR01HL146549 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI ASLAN, JOSEPH E · 2019 to 2023
$2.5M
FXI and SepsisR01GM116184 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LUPU, FLOREA, MCCARTY, OWEN J · 2015 to 2018
$1.9M
American Heart Association-American Stroke Association 13EIA12630000American Heart Association-American Stroke Association 17SDG33350075NHLBI NIH HHS R01 HL101972NHLBI NIH HHS R01 HL146549NIGMS NIH HHS R01 GM116184NIH HHS R01GM116184NIH HHS R01HL101972NIH HHS R01HL146549
6 · The paper itself

Abstract

Protein posttranslational modifications critically regulate a range of physiological and disease processes. In addition to tyrosine, serine, and threonine phosphorylation, reversible N-ε acylation and alkylation of protein lysine residues also modulate diverse aspects of cellular function. Studies of lysine acyl and alkyl modifications have focused on nuclear proteins in epigenetic regulation; however, lysine modifications are also prevalent on cytosolic proteins to serve increasingly apparent, although less understood roles in cell regulation. Here, the methyl-lysine (meK) proteome of anucleate blood platelets is characterized. With high-resolution, multiplex MS methods, 190 mono-, di-, and tri-meK modifications are identified on 150 different platelet proteins-including 28 meK modifications quantified by tandem mass tag (TMT) labeling. In addition to identifying meK modifications on calmodulin (CaM), GRP78 (HSPA5, BiP), and EF1A1 that have been previously characterized in other cell types, more novel modifications are also uncovered on cofilin, drebin-like protein (DBNL, Hip-55), DOCK8, TRIM25, and numerous other cytoplasmic proteins. Together, the results and analyses support roles for lysine methylation in mediating cytoskeletal, translational, secretory, and other cellular processes. MS data for this study have been deposited into the ProteomeXchange Consortium via the PRIDE partner repository with the dataset identifier PXD012217.

Indexed as

Protein Processing, Post-TranslationalBlood PlateletsEndoplasmic Reticulum Chaperone BiPHumansLysineMethylationProteomeProteomicsTandem Mass SpectrometryEndoplasmic Reticulum Chaperone BiPHSPA5 protein, humanLysineProteomebiomarkerslysine methylationmethyllysineplateletsposttranslational modifications

Identifiers

PMID30977292
PMCPMC7062300
OpenAlexW2940065222

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.